RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PHOX2BQ99453 314 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 RHOBTB2Q9BYZ6 727 aa23.41■■□□□ 1.34
SQSTM1-210ENST00000506042 PROB1E7EW31 1015 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 C2CD2LO14523 706 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 KRT2P35908 639 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 TPH2Q8IWU9 490 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 FLCNQ8NFG4 579 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 PLEKHA4Q9H4M7 779 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 PIDD1Q9HB75 910 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 MAN1C1Q9NR34 630 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 PCDHA12Q9UN75 941 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 GIT1Q9Y2X7 761 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 ZMYM2Q9UBW7 1377 aa23.4■■□□□ 1.34
SQSTM1-210ENST00000506042 MEIS3P2A8K0S8 358 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 STK25O00506 426 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 DDHD2O94830 711 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 PDGFBP01127 241 aaPredicted RBP23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 GBP2P32456 591 aaPredicted RBP23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 FOXK2Q01167 660 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 GPR65Q8IYL9 337 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 CSRNP2Q9H175 543 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 ANKEF1Q9NU02 776 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 CDH22Q9UJ99 828 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 DUSP12Q9UNI6 340 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 PRG3Q9Y2Y8 225 aaPredicted RBP23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 IPPQ9Y573 584 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 DENND4AQ7Z401 1863 aa23.39■■□□□ 1.33
SQSTM1-210ENST00000506042 PTENP60484 403 aa23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 CYP4A11Q02928 519 aa23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 BCL7CQ8WUZ0 217 aaPredicted RBP23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 NKD2Q969F2 451 aaPredicted RBP23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 DYDC2Q96IM9 177 aa23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 AIFM3Q96NN9 605 aa23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 BMP2KQ9NSY1 1161 aaPredicted RBP23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 ZDBF2Q9HCK1 2354 aa23.38■■□□□ 1.33
SQSTM1-210ENST00000506042 ARL5CA6NH57 179 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 HOXA11P31270 313 aaPredicted RBP23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 MLH1P40692 756 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 NBL1P41271 181 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 NPY5RQ15761 445 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 CALCRLQ16602 461 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 POTEDQ86YR6 584 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 TMEM105Q8N8V8 129 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 NFKBIZQ9BYH8 718 aa23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.37■■□□□ 1.331e-7■■■■□ 21.3
SQSTM1-210ENST00000506042 ORC3Q9UBD5 711 aaPredicted RBP23.37■■□□□ 1.33
SQSTM1-210ENST00000506042 ARID2Q68CP9 1835 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 CCDC195A0A1B0GUA6 201 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 INPPL1O15357 1258 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 TSPAN1O60635 241 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 AOC1P19801 751 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 CTTNQ14247 550 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 TMEM132AQ24JP5 1023 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 USP41Q3LFD5 358 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 SLC27A1Q6PCB7 646 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 IFNLR1Q8IU57 520 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 ZBTB8OSQ8IWT0 167 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 COLGALT2Q8IYK4 626 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 SMG7Q92540 1137 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 MINDY3Q9H8M7 445 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 KCNK12Q9HB15 430 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 ZDHHC7Q9NXF8 308 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 RGL1Q9NZL6 768 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 MYO10Q9HD67 2058 aa23.36■■□□□ 1.33
SQSTM1-210ENST00000506042 CLUHO75153 1309 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 TRIOO75962 3097 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 PFKFB2O60825 505 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 LYPLA2O95372 231 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 SCRN1Q12765 414 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 GRIK3Q13003 919 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 UBXN11Q5T124 520 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 PDXDC1Q6P996 788 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 GAD1Q99259 594 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 EIF2AK1Q9BQI3 630 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 LARP6Q9BRS8 491 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 APOL6Q9BWW8 343 aa23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 WDR6Q9NNW5 1121 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 ZFP37Q9Y6Q3 630 aaPredicted RBP23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 TDRD15B5MCY1 1934 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-210ENST00000506042 NEMFO60524 1076 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 LILRB3O75022 631 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 XRCC6P12956 609 aaKnown RBP eCLIP23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 ANAPC15P60006 121 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 DSG1Q02413 1049 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 APBB1IPQ7Z5R6 666 aaPredicted RBP23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 SMG8Q8ND04 991 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 MCPH1Q8NEM0 835 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 HAS1Q92839 578 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 PRIMPOLQ96LW4 560 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 ADPGKQ9BRR6 497 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 VN1R3Q9BXE9 311 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 TTC12Q9H892 705 aaPredicted RBP23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 RXFP1Q9HBX9 757 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 WNT16Q9UBV4 365 aa23.34■■□□□ 1.33
SQSTM1-210ENST00000506042 SF3B1O75533 1304 aaKnown RBP eCLIP23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 TEX28O15482 410 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 TADA2AO75478 443 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 SCNN1GP51170 649 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 DSC1Q08554 894 aa23.33■■□□□ 1.33
SQSTM1-210ENST00000506042 ELAVL2Q12926 359 aaKnown RBP23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms