RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MYL1P05976 194 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 PLS3P13797 630 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 GAP43P17677 238 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 EIF4BP23588 611 aaKnown RBP11.06□□□□□ -0.64
NUP54-203ENST00000504173 CASP1P29466 404 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 MCM4P33991 863 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 IRS1P35568 1242 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 NAMPTP43490 491 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 ZNF131P52739 623 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 PEX3P56589 373 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 CUL4BQ13620 913 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 MBTPS1Q14703 1052 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 FBXO47Q5MNV8 452 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 DEFB128Q7Z7B8 93 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 ZBTB8OSQ8IWT0 167 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 SUGP1Q8IWZ8 645 aaKnown RBP11.06□□□□□ -0.64
NUP54-203ENST00000504173 CCDC65Q8IXS2 484 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 MYCT1Q8N699 235 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 PBXIP1Q96AQ6 731 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 DNAJC19Q96DA6 116 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 INO80BQ9C086 356 aaPredicted RBP11.06□□□□□ -0.64
NUP54-203ENST00000504173 C2orf40Q9H1Z8 148 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 C17orf75Q9HAS0 396 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 LARSQ9P2J5 1176 aaKnown RBP11.06□□□□□ -0.64
NUP54-203ENST00000504173 HOOK1Q9UJC3 728 aaKnown RBP11.06□□□□□ -0.64
NUP54-203ENST00000504173 VPS13AQ96RL7 3174 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 KMT2EQ8IZD2 1858 aa11.06□□□□□ -0.64
NUP54-203ENST00000504173 ANKRD11Q6UB99 2663 aaPredicted RBP11.05□□□□□ -0.64
NUP54-203ENST00000504173 MYH11P35749 1972 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 TMEM221A6NGB7 291 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 M0R296 226 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 NBNO60934 754 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 RPS6KA5O75582 802 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 PRR29P0C7W0 189 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 DARSP14868 501 aaKnown RBP11.05□□□□□ -0.64
NUP54-203ENST00000504173 SFPQP23246 707 aaKnown RBP eCLIP11.05□□□□□ -0.64
NUP54-203ENST00000504173 NPTX2P47972 431 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 NUBP1P53384 320 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 SMTNP53814 917 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 PTENP60484 403 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 POU5F1BQ06416 359 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 PAK2Q13177 524 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 LPIN1Q14693 890 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 POSTNQ15063 836 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 ODR4Q5SWX8 454 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 CNNM4Q6P4Q7 775 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 TSHZ1Q6ZSZ6 1077 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 TRIM67Q6ZTA4 783 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 SRGAP1Q7Z6B7 1085 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 SFR1Q86XK3 245 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 FBXL6Q8N531 539 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 TMEM40Q8WWA1 233 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 KIFC3Q9BVG8 833 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 OSBPL7Q9BZF2 842 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 IFT122Q9HBG6 1241 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 KMT5AQ9NQR1 393 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 PANK4Q9NVE7 773 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 MUTYHQ9UIF7 546 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 KCNG1Q9UIX4 513 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 NOC2LQ9Y3T9 749 aaKnown RBP11.05□□□□□ -0.64
NUP54-203ENST00000504173 SQORQ9Y6N5 450 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 SIP14410 1827 aa11.05□□□□□ -0.64
NUP54-203ENST00000504173 COL4A6Q14031 1691 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 FRMD3A2A2Y4 597 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 H0YCG3 227 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 INO80B-WBP1J3KQ70 363 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 K7ENM7 598 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 SLC16A4O15374 487 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 TRAK2O60296 914 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CSDE1O75534 798 aaKnown RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 MBD3O95983 291 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CXCL10P02778 98 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 FGFR4P22455 802 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CD52P31358 61 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 NBL1P41271 181 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 NFX1Q12986 1120 aaKnown RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 COASYQ13057 564 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 GPNMBQ14956 572 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 COL19A1Q14993 1142 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CDCA2Q69YH5 1023 aaPredicted RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 UNC13DQ70J99 1090 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CATSPER4Q7RTX7 472 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 FAM228AQ86W67 206 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 IFNLR1Q8IU57 520 aaPredicted RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 HERC6Q8IVU3 1022 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 GDPD5Q8WTR4 605 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 SPIRE2Q8WWL2 714 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 SEPT8Q92599 483 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 CCDC47Q96A33 483 aaKnown RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 CNTNAP3BQ96NU0 1288 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 NFKBIZQ9BYH8 718 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 IFIH1Q9BYX4 1025 aaKnown RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 CNTNAP3Q9BZ76 1288 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 AGO3Q9H9G7 860 aaKnown RBP11.04□□□□□ -0.64
NUP54-203ENST00000504173 TBC1D7Q9P0N9 293 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 SEL1LQ9UBV2 794 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 SCN5AQ14524 2016 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 ADGRA3Q8IWK6 1321 aa11.04□□□□□ -0.64
NUP54-203ENST00000504173 DMDP11532 3685 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PVALEFA0A1B0GWK0 134 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms