RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GOLGA6DP0CG33 693 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 PTPRAP18433 802 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 BAATQ14032 418 aaPredicted RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 SNRNP35Q16560 246 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 UGCGQ16739 394 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 PHLDB3Q6NSJ2 640 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ENOSF1Q7L5Y1 443 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 METTL13Q8N6R0 699 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 RDH13Q8NBN7 331 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 TMEM161BQ8NDZ6 487 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 IFT74Q96LB3 600 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 WRNIP1Q96S55 665 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 SH3GL2Q99962 352 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ISCUQ9H1K1 167 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 PCIF1Q9H4Z3 704 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 KIAA1586Q9HCI6 787 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 EPB41L5Q9HCM4 733 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 TMEM8AQ9HCN3 771 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 JPH1Q9HDC5 661 aaPredicted RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 SEPT11Q9NVA2 429 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 GOLGA6AQ9NYA3 693 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 TULP1O00294 542 aaPredicted RBP12.94□□□□□ -0.34
NUP54-202ENST00000502850 KRIT1O00522 736 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 ZC3H11AO75152 810 aaKnown RBP eCLIP12.94□□□□□ -0.342e-6■■■■□ 20.6
NUP54-202ENST00000502850 RTN2O75298 545 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 GZMAP12544 262 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 GARTP22102 1010 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 NPTX2P47972 431 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 GCLMP48507 274 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 PPATQ06203 517 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 TBC1D10BQ4KMP7 808 aaPredicted RBP12.94□□□□□ -0.34
NUP54-202ENST00000502850 NOL9Q5SY16 702 aaKnown RBP12.94□□□□□ -0.34
NUP54-202ENST00000502850 NBPF12Q5TAG4 269 aaPredicted RBP12.94□□□□□ -0.34
NUP54-202ENST00000502850 MIS18BP1Q6P0N0 1132 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 OLIG1Q8TAK6 271 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 SLC35G2Q8TBE7 412 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 KCNN1Q92952 543 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 LRRC45Q96CN5 670 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 CEP170P1Q96L14 293 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 ATP6V0A4Q9HBG4 840 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 COQ4Q9Y3A0 265 aa12.94□□□□□ -0.34
NUP54-202ENST00000502850 SYNGAP1Q96PV0 1343 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 DENND3A2RUS2 1198 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 FOXN3O00409 490 aaPredicted RBP12.93□□□□□ -0.34
NUP54-202ENST00000502850 RAD51CO43502 376 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 ATP9AO75110 1047 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 PHACTR2O75167 634 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 LRRN2O75325 713 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 GLI1P08151 1106 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 KCNA2P16389 499 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 GPC3P51654 580 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 GPC5P78333 572 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 PPP3CAQ08209 521 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 ZSCAN26Q16670 478 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 BRDTQ58F21 947 aaPredicted RBP12.93□□□□□ -0.34
NUP54-202ENST00000502850 CFAP58Q5T655 872 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 PLA2G4FQ68DD2 849 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 ANO5Q75V66 913 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 SAMD7Q7Z3H4 446 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 UBL4BQ8N7F7 174 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 C1orf131Q8NDD1 294 aaKnown RBP12.93□□□□□ -0.34
NUP54-202ENST00000502850 FBXL18Q96ME1 805 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 NT5C1BQ96P26 610 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 TMEM117Q9H0C3 514 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 RAB17Q9H0T7 212 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 HOXC10Q9NYD6 342 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 GABBR1Q9UBS5 961 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 SLC9A2Q9UBY0 812 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 ZNF214Q9UL59 606 aaPredicted RBP12.93□□□□□ -0.34
NUP54-202ENST00000502850 SIP14410 1827 aa12.93□□□□□ -0.34
NUP54-202ENST00000502850 AGPSO00116 658 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 BUB1BO60566 1050 aaPredicted RBP12.92□□□□□ -0.34
NUP54-202ENST00000502850 MTA2O94776 668 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 GGPS1O95749 300 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 EGFRP00533 1210 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 HSPA1AP0DMV8 641 aaKnown RBP12.92□□□□□ -0.34
NUP54-202ENST00000502850 HSPA1BP0DMV9 641 aaKnown RBP12.92□□□□□ -0.34
NUP54-202ENST00000502850 ZBTB48P10074 688 aaPredicted RBP12.92□□□□□ -0.34
NUP54-202ENST00000502850 ABCB4P21439 1286 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 CNGA1P29973 690 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 GYS2P54840 703 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 DLG4P78352 724 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 MTMR3Q13615 1198 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 SUPT20HL1Q3ZLR7 823 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 CATSPERGQ6ZRH7 1159 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 CD302Q8IX05 232 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 KLHL7Q8IXQ5 586 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 FAM71AQ8IYT1 594 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 GPD1LQ8N335 351 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 FBXL13Q8NEE6 735 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 CHST13Q8NET6 341 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 DNERQ8NFT8 737 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 IFT81Q8WYA0 676 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 MFSD14AQ96MC6 490 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 GDAP1L1Q96MZ0 367 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 RPS6KC1Q96S38 1066 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 FAM114A2Q9NRY5 505 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.92□□□□□ -0.34
NUP54-202ENST00000502850 NFU1Q9UMS0 254 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 MYH9P35579 1960 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms