RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 MRPL10Q7Z7H8 261 aaKnown RBP18.03■□□□□ 0.48
SF3A1-209ENST00000496189 COLGALT1Q8NBJ5 622 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 TSHZ2Q9NRE2 1034 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 IPPQ9Y573 584 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 ABCD1P33897 745 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 UBE3AQ05086 875 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 BMS1Q14692 1282 aaKnown RBP18.02■□□□□ 0.48
SF3A1-209ENST00000496189 UBXN11Q5T124 520 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 SV2BQ7L1I2 683 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 KLHL23Q8NBE8 558 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 KIFC3Q9BVG8 833 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 APOL6Q9BWW8 343 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 EIF2AQ9BY44 585 aaKnown RBP18.02■□□□□ 0.48
SF3A1-209ENST00000496189 ZHX3Q9H4I2 956 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 TMEM134Q9H6X4 195 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 ALG13Q9NP73 1137 aaKnown RBP18.02■□□□□ 0.48
SF3A1-209ENST00000496189 CHMP5Q9NZZ3 219 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 PARP2Q9UGN5 583 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 PLAGL2Q9UPG8 496 aa18.02■□□□□ 0.48
SF3A1-209ENST00000496189 SFI1A8K8P3 1242 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 ZC3H11AO75152 810 aaKnown RBP eCLIP18.01■□□□□ 0.47
SF3A1-209ENST00000496189 NR1I2O75469 434 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 LINC00271P0C7V0 271 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 DCAF4L1Q3SXM0 396 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 ATF7IP2Q5U623 682 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 KCNT2Q6UVM3 1135 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.01■□□□□ 0.47
SF3A1-209ENST00000496189 DAW1Q8N136 415 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 MYCT1Q8N699 235 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 LEO1Q8WVC0 666 aaPredicted RBP18.01■□□□□ 0.47
SF3A1-209ENST00000496189 SPIRE2Q8WWL2 714 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 RPS6KC1Q96S38 1066 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 MRPL4Q9BYD3 311 aaKnown RBP18.01■□□□□ 0.47
SF3A1-209ENST00000496189 LRRC27Q9C0I9 530 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 CCDC113Q9H0I3 377 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 GBP3Q9H0R5 595 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 NSUN3Q9H649 340 aaKnown RBP18.01■□□□□ 0.47
SF3A1-209ENST00000496189 CWH43Q9H720 699 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 PARVGQ9HBI0 331 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 RNF19AQ9NV58 838 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 SPG21Q9NZD8 308 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 THEGQ9P2T0 379 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 GIT1Q9Y2X7 761 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 CHD7Q9P2D1 2997 aa18.01■□□□□ 0.47
SF3A1-209ENST00000496189 GRM6O15303 877 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 SLC16A4O15374 487 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 OFD1O75665 1012 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 FGF18O76093 207 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 ITGB1P05556 798 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 CACNB1Q02641 598 aaPredicted RBP18■□□□□ 0.47
SF3A1-209ENST00000496189 AAK1Q2M2I8 961 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 USP49Q70CQ1 688 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 CDR2LQ86X02 465 aaPredicted RBP18■□□□□ 0.47
SF3A1-209ENST00000496189 SMG8Q8ND04 991 aaKnown RBP18■□□□□ 0.47
SF3A1-209ENST00000496189 MICAL1Q8TDZ2 1067 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 POF1BQ8WVV4 589 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 TMEM169Q96HH4 297 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 IPO9Q96P70 1041 aaKnown RBP18■□□□□ 0.47
SF3A1-209ENST00000496189 REEP2Q9BRK0 252 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 TCHPQ9BT92 498 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 PDZD7Q9H5P4 517 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 BLOC1S4Q9NUP1 217 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 TBC1D13Q9NVG8 400 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 FAM13BQ9NYF5 915 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 ARHGAP28Q9P2N2 729 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 PCDHA7Q9UN72 937 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 COG5Q9UP83 839 aa18■□□□□ 0.47
SF3A1-209ENST00000496189 NCK2O43639 380 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 CSPG5O95196 566 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 MAPK7Q13164 816 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 PDE12Q6L8Q7 609 aaKnown RBP17.99■□□□□ 0.47
SF3A1-209ENST00000496189 AGMOQ6ZNB7 445 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 PDILTQ8N807 584 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 BICD1Q96G01 975 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 PYM1Q9BRP8 204 aaKnown RBP17.99■□□□□ 0.47
SF3A1-209ENST00000496189 NTPCRQ9BSD7 190 aaKnown RBP17.99■□□□□ 0.47
SF3A1-209ENST00000496189 NXF3Q9H4D5 531 aaKnown RBP17.99■□□□□ 0.47
SF3A1-209ENST00000496189 STK39Q9UEW8 545 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 LZTS1Q9Y250 596 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 KIAA1671Q9BY89 1806 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 ZMYM2Q9UBW7 1377 aa17.99■□□□□ 0.47
SF3A1-209ENST00000496189 TRANK1O15050 2925 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 NPHP3-ACAD11A0A0J9YXS1 232 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 ARL5CA6NH57 179 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 K7ENM7 598 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 MLH1P40692 756 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 MATR3P43243 847 aaKnown RBP eCLIP17.98■□□□□ 0.47
SF3A1-209ENST00000496189 YARSP54577 528 aaKnown RBP17.98■□□□□ 0.47
SF3A1-209ENST00000496189 BCAR1P56945 870 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 AMPD3Q01432 767 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 ARSHQ5FYA8 562 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 AXDND1Q5T1B0 1012 aaPredicted RBP17.98■□□□□ 0.47
SF3A1-209ENST00000496189 LRRC55Q6ZSA7 311 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 SPPL3Q8TCT6 385 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 MRPS27Q92552 414 aaKnown RBP17.98■□□□□ 0.47
SF3A1-209ENST00000496189 PANK2Q9BZ23 570 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 CUEDC2Q9H467 287 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 TLR9Q9NR96 1032 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 TNFSF13BQ9Y275 285 aa17.98■□□□□ 0.47
SF3A1-209ENST00000496189 HES2Q9Y543 173 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms