RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 TCP11X2Q5H9J9 407 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 SLFN12LQ6IEE8 588 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 TSHZ1Q6ZSZ6 1077 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 FAM126BQ8IXS8 530 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 ANKRD20A12PQ8NF67 263 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 ACO2Q99798 780 aaKnown RBP12.47□□□□□ -0.41
MCF2L-231ENST00000494043 HSPBP1Q9NZL4 362 aa12.47□□□□□ -0.41
MCF2L-231ENST00000494043 LIMA1Q9UHB6 759 aaKnown RBP12.47□□□□□ -0.41
MCF2L-231ENST00000494043 A0A0B4J269 797 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 KIAA0391O15091 583 aaKnown RBP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 TSPAN1O60635 241 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 EXOC3O60645 756 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 TOM1L1O75674 476 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 AKAP3O75969 853 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ERLIN2O94905 339 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CD4P01730 458 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CHRNA1P02708 482 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CTSHP09668 335 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 EPB41P11171 864 aaKnown RBP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 FGFR4P22455 802 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 PROZP22891 400 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 SFPQP23246 707 aaKnown RBP eCLIP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CASP4P49662 377 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ATN1P54259 1190 aaPredicted RBP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 MARSP56192 900 aaKnown RBP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 FANCCQ00597 558 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 PLCB2Q00722 1185 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 RBL2Q08999 1139 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 KRT31Q15323 416 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 TMEM132AQ24JP5 1023 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CCDC40Q4G0X9 1142 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 FAM26DQ5JW98 314 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ATF7IP2Q5U623 682 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CEP135Q66GS9 1140 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 SLC39A5Q6ZMH5 540 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 CATSPER4Q7RTX7 472 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 XXYLT1Q8NBI6 393 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 TMEM40Q8WWA1 233 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 POMGNT1Q8WZA1 660 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ZBTB45Q96K62 511 aaPredicted RBP12.46□□□□□ -0.41
MCF2L-231ENST00000494043 MKNK1Q9BUB5 465 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 PCIF1Q9H4Z3 704 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ANKFY1Q9P2R3 1169 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 TNFSF13BQ9Y275 285 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 FRMD4BQ9Y2L6 1034 aa12.46□□□□□ -0.41
MCF2L-231ENST00000494043 ABLIM1O14639 778 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 TLR3O15455 904 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 PQBP1O60828 265 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 SERPINC1P01008 464 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 CKBP12277 381 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 ARF4P18085 180 aaPredicted RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 PSMC2P35998 433 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 MATR3P43243 847 aaKnown RBP eCLIP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 MTIF2P46199 727 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 MCL1Q07820 350 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 NOLC1Q14978 699 aaKnown RBP eCLIP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 C1orf53Q5VUE5 145 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 EEF1DP3Q658K8 133 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 MPZL3Q6UWV2 235 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 APTXQ7Z2E3 356 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 ANKRD33Q7Z3H0 272 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 FRMD5Q7Z6J6 570 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 FAM228AQ86W67 206 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 FAM186BQ8IYM0 893 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 CCDC155Q8N6L0 562 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 CAGE1Q8TC20 777 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 SAAL1Q96ER3 474 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 FBXL18Q96ME1 805 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 MSTO1Q9BUK6 570 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 HAPLN2Q9GZV7 340 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 PDZD7Q9H5P4 517 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 C11orf49Q9H6J7 331 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 PTPRHQ9HD43 1115 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 AGPAT5Q9NUQ2 364 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 TAB2Q9NYJ8 693 aa12.45□□□□□ -0.42
MCF2L-231ENST00000494043 AGO2Q9UKV8 859 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 NOC2LQ9Y3T9 749 aaKnown RBP12.45□□□□□ -0.42
MCF2L-231ENST00000494043 GOLGA8IPA6NC78 632 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 GOLGA8JA6NMD2 632 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 N4BP3O15049 544 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 MAPK13O15264 365 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 CLDN3O15551 220 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 EXTL3O43909 919 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 AXLP30530 894 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 COPB1P53618 953 aaKnown RBP12.44□□□□□ -0.42
MCF2L-231ENST00000494043 NCBP1Q09161 790 aaKnown RBP12.44□□□□□ -0.42
MCF2L-231ENST00000494043 BFSP2Q13515 415 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 HSP90AA2PQ14568 343 aaPredicted RBP12.44□□□□□ -0.42
MCF2L-231ENST00000494043 ZNF568Q3ZCX4 644 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 TRIM60Q495X7 471 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 FBXO47Q5MNV8 452 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 ZNF618Q5T7W0 954 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 TRAF7Q6Q0C0 670 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 ZBTB33Q86T24 672 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 CREBRFQ8IUR6 639 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 TRIM59Q8IWR1 403 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 GPD1LQ8N335 351 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 ZSWIM2Q8NEG5 633 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 BORCS6Q96GS4 357 aa12.44□□□□□ -0.42
MCF2L-231ENST00000494043 CPB2Q96IY4 423 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms