RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CICQ96RK0 1608 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 KRT36O76013 467 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TJP3O95049 919 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 EYA4O95677 639 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 CHRNB2P17787 502 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 ATP5DP30049 168 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 DYNC1I2Q13409 638 aaKnown RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 GIT2Q14161 759 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 C4orf50Q6ZRC1 276 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 GBP5Q96PP8 586 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 PIGSQ96S52 555 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 MKNK2Q9HBH9 465 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.53□□□□□ -0.42e-6■■■■□ 24.5
HDAC4-210ENST00000493582 JAG2Q9Y219 1238 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 BCL9O00512 1426 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 COL1A1P02452 1464 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TTLL1O95922 423 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 KRT18P05783 430 aaKnown RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 GSTA2P09210 222 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 PYGMP11217 842 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 CTNNA2P26232 953 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 MARK3P27448 753 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 COILP38432 576 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 SUSD4Q5VX71 490 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 GPBP1Q86WP2 473 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 SYCP3Q8IZU3 236 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 SPIRE2Q8WWL2 714 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 MIPEPQ99797 713 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 UBA5Q9GZZ9 404 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TMOD3Q9NYL9 352 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 ZBTB1Q9Y2K1 713 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 CAPN9O14815 690 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TSPY3P0CV98 308 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TSPY8P0CW00 308 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 MCL1Q07820 350 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 TRIP13Q15645 432 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 EPM2AIP1Q7L775 607 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-210ENST00000493582 CPNE8Q86YQ8 564 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 PCDHB13Q9Y5F0 798 aa12.53□□□□□ -0.4
HDAC4-210ENST00000493582 DLEC1Q9Y238 1755 aa12.52□□□□□ -0.4
HDAC4-210ENST00000493582 CREB3O43889 395 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 MARCH6O60337 910 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 TBX10O75333 385 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 TTC4O95801 387 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 ALAS1P13196 640 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 IL9RQ01113 521 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 TMEM63BQ5T3F8 832 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 FRMD5Q7Z6J6 570 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 FBXO41Q8TF61 875 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 GATA6Q92908 595 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 COA7Q96BR5 231 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 ATP8A2Q9NTI2 1148 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 NUMBLQ9Y6R0 609 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 NCANO14594 1321 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 SYNGAP1Q96PV0 1343 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 CLIC2O15247 247 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 ADAMTS2O95450 1211 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 PLA2G4BP0C869 781 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 LMNB1P20700 586 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 RASSF2P50749 326 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 MOGSQ13724 837 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 EDRF1Q3B7T1 1238 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 ACSBG2Q5FVE4 666 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 SLC35C1Q96A29 364 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 DMAP1Q9NPF5 467 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-210ENST00000493582 STARD13Q9Y3M8 1113 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 PASKQ96RG2 1323 aa12.52□□□□□ -0.41
HDAC4-210ENST00000493582 RASA4BC9J798 803 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 RASA4O43374 803 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 THAP12O43422 761 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ETS2P15036 469 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PTPN4P29074 926 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 MESDQ14696 234 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 DRAP1Q14919 205 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 KPNB1Q14974 876 aaKnown RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 C1orf54Q8WWF1 131 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PTPRN2Q92932 1015 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 OPTNQ96CV9 577 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CADM1Q9BY67 442 aaKnown RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 IKZF4Q9H2S9 585 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 BCAS3Q9H6U6 928 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PREBQ9HCU5 417 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 A0A1W2PRG0 241 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 POTEB3A0JP26 581 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 MAGEA13PA6NCF6 341 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 POTECB2RU33 542 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CYP1A1P04798 512 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ANXA13P27216 316 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 PRDX5P30044 214 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 HOXD13P35453 343 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 SOX5P35711 763 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 TNNI2P48788 182 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 ERFP50548 548 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CDR2Q01850 454 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CNPY1Q3B7I2 92 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 POTEBQ6S5H4 581 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 LRRC74BQ6ZQY2 392 aa12.51□□□□□ -0.41
HDAC4-210ENST00000493582 CYFIP1Q7L576 1253 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms