RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PALB2Q86YC2 1186 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 SLC20A1Q8WUM9 679 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 TAF4BQ92750 862 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 POP1Q99575 1024 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 ASCC2Q9H1I8 757 aaPredicted RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 TMEM8AQ9HCN3 771 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 COQ4Q9Y3A0 265 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 FARP2O94887 1054 aaPredicted RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 MOB2Q70IA6 237 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 ANKRD13AQ8IZ07 590 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 GPD1LQ8N335 351 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 LMBR1Q8WVP7 490 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 DHX33Q9H6R0 707 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 TOPORSQ9NS56 1045 aaPredicted RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 TAS2R14Q9NYV8 317 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 DMGDHQ9UI17 866 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 GSTTP1A0A1W2PQM5 241 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 SPDYE5A6NIY4 337 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 CXCL11O14625 94 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 MYBL2P10244 700 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 ABCD1P33897 745 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 RFFLQ8WZ73 363 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 TMEM143Q96AN5 459 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 CDCA5Q96FF9 252 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 BICD1Q96G01 975 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 KREMEN1Q96MU8 473 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 CEP89Q96ST8 783 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 STXBP5LQ9Y2K9 1186 aa22.83■■□□□ 1.25
CCDC88B-208ENST00000492980 ZBTB48P10074 688 aaPredicted RBP22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 ASAP3Q8TDY4 903 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 CTNNBL1Q8WYA6 563 aaPredicted RBP22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 PCYT2Q99447 389 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 NIFKQ9BYG3 293 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 PORCNQ9H237 461 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 R3HDMLQ9H3Y0 253 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 SEPT11Q9NVA2 429 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 H3BQF6 201 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 KCNK3O14649 394 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 GTF2H1P32780 548 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 GPC3P51654 580 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 ENPEPQ07075 957 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 TERF2Q15554 542 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 GSPT2Q8IYD1 628 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 SYCE1Q8N0S2 351 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 KCNN1Q92952 543 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 PDE11AQ9HCR9 933 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.82■■□□□ 1.249e-11■■■■■ 86.5
CCDC88B-208ENST00000492980 KCNG1Q9UIX4 513 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 KCNH4Q9UQ05 1017 aa22.82■■□□□ 1.24
CCDC88B-208ENST00000492980 ABCB4P21439 1286 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 MRPS25P82663 173 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 C8orf74Q6P047 294 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 FAM71AQ8IYT1 594 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 SLC35G2Q8TBE7 412 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 PBKQ96KB5 322 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 OSGEPQ9NPF4 335 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 AGTPBP1Q9UPW5 1226 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 TULP1O00294 542 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 GLRA2P23416 452 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 ARL2P36404 184 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 SLC7A5Q01650 507 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 PTPROQ16827 1216 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 GLE1Q53GS7 698 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 C9orf131Q5VYM1 1079 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 PEX26Q7Z412 305 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 USP37Q86T82 979 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 PPM1KQ8N3J5 372 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 HELQQ8TDG4 1101 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 TAS1R2Q8TE23 839 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 ARHGEF26Q96DR7 871 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 FAM213AQ9BRX8 229 aa22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 SUCLA2Q9P2R7 463 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-208ENST00000492980 ANKRD62A6NC57 917 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 LIG4P49917 911 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 NEDD9Q14511 834 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 DAAM2Q86T65 1068 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 NT5DC3Q86UY8 548 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 RPUSD2Q8IZ73 545 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 USP38Q8NB14 1042 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 FBXL13Q8NEE6 735 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 SHC3Q92529 594 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 HINFPQ9BQA5 517 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 THAP2Q9H0W7 228 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 STIM2Q9P246 746 aa22.8■■□□□ 1.24
CCDC88B-208ENST00000492980 POLR3GO15318 223 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 YBX3P16989 372 aaKnown RBP eCLIP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 NF2P35240 595 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 USP8P40818 1118 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 NAMPTP43490 491 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 MFAP3P55082 362 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 DMTNQ08495 405 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 PPIL2Q13356 520 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 SLC7A3Q8WY07 619 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 TXNRD2Q9NNW7 524 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 RAB20Q9NX57 234 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 NOCTQ9UK39 431 aaKnown RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 EXTL3O43909 919 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 BUB1BO60566 1050 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 SGPL1O95470 568 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 SLC25A27O95847 323 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms