RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	DBF4B	Q8NFT6	615 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	GATAD2B	Q8WXI9	593 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	SHD	Q96IW2	340 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MPHOSPH8	Q99549	860 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	DDX23	Q9BUQ8	820 aa	Known RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	IDI2	Q9BXS1	227 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	KATNBL1	Q9H079	304 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MROH8	Q9H579	483 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	RC3H2	Q9HBD1	1191 aa	Known RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	GPN3	Q9UHW5	284 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	ADAMTS8	Q9UP79	889 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MED13	Q9UHV7	2174 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	GOLGA4	Q13439	2230 aa	Known RBP	4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	KANSL1L	A0AUZ9	987 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	FAM170B	A6NMN3	283 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606		H0Y626	953 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	KLF4	O43474	513 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	EPN2	O95208	641 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	TRIM16	O95361	564 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CD72	P21854	359 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	ARNT	P27540	789 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	IL12RB1	P42701	662 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CDK8	P49336	464 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	ERVFC1	P60507	584 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	TNFAIP2	Q03169	654 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	NFX1	Q12986	1120 aa	Known RBP	4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	SEPT6	Q14141	434 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	GDF6	Q6KF10	455 aa	Predicted RBP	4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CES5A	Q6NT32	575 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	XRRA1	Q6P2D8	792 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	MAMDC4	Q6UXC1	1216 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	VPS37D	Q86XT2	251 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	TMC8	Q8IU68	726 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	SULF2	Q8IWU5	870 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	NUDT8	Q8WV74	236 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	P2RX5	Q93086	422 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	IL17RA	Q96F46	866 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	C12orf42	Q96LP6	360 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	MYADM	Q96S97	322 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	MMP19	Q99542	508 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	PLVAP	Q9BX97	442 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	RBSN	Q9H1K0	784 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	IGSF9	Q9P2J2	1179 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	PLEKHB1	Q9UF11	243 aa	Predicted RBP	4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	DBR1	Q9UK59	544 aa	Known RBP	4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CYP8B1	Q9UNU6	501 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CLSPN	Q9HAW4	1339 aa		4.95	□□□□□ -1.62
UBR4-215	ENST00000492606	CHURC1-FNTB	B4DL54	471 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	CDX4	O14627	284 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	DYNC1LI2	O43237	492 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SMARCA5	O60264	1052 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	N4BP1	O75113	896 aa	Known RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	ITGB2	P05107	769 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	VCAM1	P19320	739 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	CDC27	P30260	824 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	HOXC13	P31276	330 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	FNTB	P49356	437 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	ITIH3	Q06033	890 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	FZD5	Q13467	585 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	PLS1	Q14651	629 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	UBXN2B	Q14CS0	331 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SNAP47	Q5SQN1	464 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	LCE2A	Q5TA79	106 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	ZNF787	Q6DD87	383 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	TLK2	Q86UE8	772 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	FAM169B	Q8N8A8	192 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	MICAL1	Q8TDZ2	1067 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	TBC1D22A	Q8WUA7	517 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	RTF1	Q92541	710 aa	Known RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	NKD1	Q969G9	470 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	CLDN23	Q96B33	292 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	WBP1	Q96G27	269 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SPATA32	Q96LK8	384 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	KLHL5	Q96PQ7	755 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	IFIH1	Q9BYX4	1025 aa	Known RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SOX17	Q9H6I2	414 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	RWDD3	Q9Y3V2	267 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	COL6A5	A8TX70	2615 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SIPA1L1	O43166	1804 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	CSMD2	Q7Z408	3487 aa		4.94	□□□□□ -1.62
UBR4-215	ENST00000492606	SHISA8	B8ZZ34	492 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606		H3BRJ5	948 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	PLIN1	O60240	522 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	RGS9	O75916	674 aa	Predicted RBP	4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	CKB	P12277	381 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	EIF2S3	P41091	472 aa	Known RBP	4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	CLC	Q05315	142 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	PPP2R3A	Q06190	1150 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	APOBR	Q0VD83	1088 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	PICALM	Q13492	652 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	SNW1	Q13573	536 aa	Known RBP	4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	MPP2	Q14168	576 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	PTPN14	Q15678	1187 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	RARS2	Q5T160	578 aa	Known RBP	4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	KIAA1841	Q6NSI8	718 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	TXNDC11	Q6PKC3	985 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	MARCH9	Q86YJ5	346 aa		4.93	□□□□□ -1.62
UBR4-215	ENST00000492606	MSL3	Q8N5Y2	521 aa	Known RBP	4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms