RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR5M3Q8NGP4 307 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CFHR4Q92496 578 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 EDAQ92838 391 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 EAF2Q96CJ1 260 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 C1QTNF3Q9BXJ4 246 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 HAPLN2Q9GZV7 340 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CSRNP2Q9H175 543 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 KCTD10Q9H3F6 313 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CD248Q9HCU0 757 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 TLR9Q9NR96 1032 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 PRSS50Q9UI38 385 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 EDARQ9UNE0 448 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 HDAC5Q9UQL6 1122 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 GIT1Q9Y2X7 761 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 POLA1P09884 1462 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 DNMBPQ6XZF7 1577 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 PREX1Q8TCU6 1659 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 KIAA0556O60303 1618 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 SHROOM2Q13796 1616 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 GPR39O43194 453 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 MTSS1O43312 755 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 LY86O95711 162 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 GYPEP15421 78 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 IBSPP21815 317 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ENPP1P22413 925 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CANXP27824 592 aaKnown RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CDK17Q00537 523 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 MEF2AQ02078 507 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CD69Q07108 199 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CNGB1Q14028 1251 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ELAVL1Q15717 326 aaKnown RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 PITRM1Q5JRX3 1037 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 GJC2Q5T442 439 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 USP51Q70EK9 711 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF808Q8N4W9 903 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ZCRB1Q8TBF4 217 aaKnown RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 TGFBRAP1Q8WUH2 860 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 AUTS2Q8WXX7 1259 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 MIEF2Q96C03 454 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 GPHA2Q96T91 129 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CDC5LQ99459 802 aaKnown RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF341Q9BYN7 854 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 QRSL1Q9H0R6 528 aaKnown RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 C14orf119Q9NWQ9 140 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 AURKAIP1Q9NWT8 199 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-208ENST00000490788 ING3Q9NXR8 418 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 DPP7Q9UHL4 492 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 TESMINQ9Y4I5 508 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 CDY2AQ9Y6F7 541 aa2.94□□□□□ -1.94
HMGB1-208ENST00000490788 PTPRKQ15262 1439 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 POGZQ7Z3K3 1410 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 MAP3K4Q9Y6R4 1608 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 GRIN2AQ12879 1464 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SBNO2Q9Y2G9 1366 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 A0A0A6YYK5 440 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 C1QTNF3-AMACRE9PGA6 284 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 PHF2O75151 1096 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SEC24DO94855 1032 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 LTA4HP09960 611 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 HSP90B1P14625 803 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 PRELPP51888 382 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SLC5A3P53794 718 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 PER3P56645 1201 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 WNT3AP56704 352 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 CCT2P78371 535 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 MRPS9P82933 396 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SAFB2Q14151 953 aaKnown RBP eCLIP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 PDCD1Q15116 288 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 CLUL1Q15846 466 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 USP39Q53GS9 565 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 TOR2AQ5JU69 321 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SPDYAQ5MJ70 313 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 MEX3CQ5U5Q3 659 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 PDZD4Q76G19 769 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 TAS1R1Q7RTX1 841 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 C1orf210Q8IVY1 113 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 MB21D1Q8N884 522 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 GLB1L3Q8NCI6 653 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 ATXN2LQ8WWM7 1075 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 FATE1Q969F0 183 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF512Q96ME7 567 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 FAM193BQ96PV7 902 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 UHRF1Q96T88 793 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SOX7Q9BT81 388 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 ACE2Q9BYF1 805 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 AGO3Q9H9G7 860 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 DNAJC28Q9NX36 388 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SLC5A4Q9NY91 659 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 EVLQ9UI08 416 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 ATP8A1Q9Y2Q0 1164 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 SH3BP1Q9Y3L3 701 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 EPRSP07814 1512 aaKnown RBP2.93□□□□□ -1.94
HMGB1-208ENST00000490788 RPTORQ8N122 1335 aa2.93□□□□□ -1.94
HMGB1-208ENST00000490788 GOLGA6L6A8MZA4 724 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 AKAP8O43823 692 aaKnown RBP2.92□□□□□ -1.94
HMGB1-208ENST00000490788 AKR1B10O60218 316 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 PRKD3O94806 890 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 EYA4O95677 639 aa2.92□□□□□ -1.94
HMGB1-208ENST00000490788 CFBP00751 764 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms