RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TNFRSF25Q93038 417 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 CPB2Q96IY4 423 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 EIF2AK1Q9BQI3 630 aaKnown RBP13.82□□□□□ -0.2
CPSF3-204ENST00000489403 HERC2P3Q9BVR0 1158 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 UBN1Q9NPG3 1134 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 MRPL17Q9NRX2 175 aaKnown RBP13.82□□□□□ -0.2
CPSF3-204ENST00000489403 LIMD1Q9UGP4 676 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 PRG3Q9Y2Y8 225 aaPredicted RBP13.82□□□□□ -0.2
CPSF3-204ENST00000489403 IPPQ9Y573 584 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 MYO15AQ9UKN7 3530 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 C2CD2LO14523 706 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 INPPL1O15357 1258 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 BAG4O95429 457 aaKnown RBP13.81□□□□□ -0.2
CPSF3-204ENST00000489403 FDPSP14324 419 aaKnown RBP13.81□□□□□ -0.2
CPSF3-204ENST00000489403 KRT2P35908 639 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 MLH1P40692 756 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 OR1G1P47890 313 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 NUBP1P53384 320 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 AK2P54819 239 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 PTENP60484 403 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 CAPSQ13938 189 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 NOTUMQ6P988 496 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 CCDC149Q6ZUS6 474 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 IFNLR1Q8IU57 520 aaPredicted RBP13.81□□□□□ -0.2
CPSF3-204ENST00000489403 TPH2Q8IWU9 490 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 RNF168Q8IYW5 571 aaPredicted RBP13.81□□□□□ -0.2
CPSF3-204ENST00000489403 TMEM105Q8N8V8 129 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 ASAP3Q8TDY4 903 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 WASF1Q92558 559 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 RNF39Q9H2S5 420 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 MIOSQ9NXC5 875 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 HES2Q9Y543 173 aa13.81□□□□□ -0.2
CPSF3-204ENST00000489403 ARL5CA6NH57 179 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 H0Y858 1186 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 INO80B-WBP1J3KQ70 363 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 WNT7AO00755 349 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 GALR2O43603 387 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-204ENST00000489403 LYPLA2O95372 231 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 LARGE1O95461 756 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 EFEMP2O95967 443 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 URODP06132 367 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 SCNN1GP51170 649 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 MBTD1Q05BQ5 628 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 POU5F1BQ06416 359 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 DSC1Q08554 894 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 MXD4Q14582 209 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-204ENST00000489403 PCBP1Q15365 356 aaKnown RBP eCLIP13.8□□□□□ -0.2
CPSF3-204ENST00000489403 AMHR2Q16671 573 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 C15orf39Q6ZRI6 1047 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 TAS1R1Q7RTX1 841 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 ATOH1Q92858 354 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-204ENST00000489403 ACSF2Q96CM8 615 aaPredicted RBP13.8□□□□□ -0.2
CPSF3-204ENST00000489403 CCDC51Q96ER9 411 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 ZFP42Q96MM3 310 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 RPS6KC1Q96S38 1066 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 GAD1Q99259 594 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 CSRNP2Q9H175 543 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 IRF2BPLQ9H1B7 796 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 MAN1C1Q9NR34 630 aa13.8□□□□□ -0.2
CPSF3-204ENST00000489403 F8W810 466 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 TEX28O15482 410 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 DGAT1O75907 488 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 ARF4P18085 180 aaPredicted RBP13.79□□□□□ -0.2
CPSF3-204ENST00000489403 TFDP1Q14186 410 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 ANKRD1Q15327 319 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 CALCRLQ16602 461 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 NECAB1Q8N987 351 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 HSD17B14Q9BPX1 270 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 APOL6Q9BWW8 343 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 NXF3Q9H4D5 531 aaKnown RBP13.79□□□□□ -0.2
CPSF3-204ENST00000489403 TTC12Q9H892 705 aaPredicted RBP13.79□□□□□ -0.2
CPSF3-204ENST00000489403 BRMS1Q9HCU9 246 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 ANKEF1Q9NU02 776 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 PCDHA12Q9UN75 941 aa13.79□□□□□ -0.2
CPSF3-204ENST00000489403 B4GALT5O43286 388 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ST18O60284 1047 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GFRA3O60609 400 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ADH1AP07327 375 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GLRA2P23416 452 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ARL2P36404 184 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GLUD2P49448 558 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 RARRES1P49788 294 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ANAPC15P60006 121 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ME3Q16798 604 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 CWF19L1Q69YN2 538 aaKnown RBP13.78□□□□□ -0.2
CPSF3-204ENST00000489403 ASTLQ6HA08 431 aaPredicted RBP13.78□□□□□ -0.2
CPSF3-204ENST00000489403 OTOP3Q7RTS5 596 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GSTCDQ8NEC7 633 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 CMASQ8NFW8 434 aaPredicted RBP13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GTF3C6Q969F1 213 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 NFKBIZQ9BYH8 718 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 TRIM6Q9C030 488 aaPredicted RBP13.78□□□□□ -0.2
CPSF3-204ENST00000489403 MFSD1Q9H3U5 465 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 RXFP1Q9HBX9 757 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 SSX2IPQ9Y2D8 614 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 GIT1Q9Y2X7 761 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 DMDP11532 3685 aa13.78□□□□□ -0.2
CPSF3-204ENST00000489403 CCDC195A0A1B0GUA6 201 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 BTBD18B2RXH4 712 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms