RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 RNF19AQ9NV58 838 aa10.07□□□□□ -0.8
HDAC6-232ENST00000489053 FAN1Q9Y2M0 1017 aa10.07□□□□□ -0.8
HDAC6-232ENST00000489053 PRG3Q9Y2Y8 225 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-232ENST00000489053 GTF3C3Q9Y5Q9 886 aa10.07□□□□□ -0.8
HDAC6-232ENST00000489053 GRXCR2A6NFK2 248 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 E9PMD0 336 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 K7ERI5 159 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 B4GALT5O43286 388 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 HIP1RO75146 1068 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 CXCL14O95715 111 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 URODP06132 367 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 CDC25AP30304 524 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 MATR3P43243 847 aaKnown RBP eCLIP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 YARSP54577 528 aaKnown RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 ERVFC1P60507 584 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 STRN3Q13033 797 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 ADAM15Q13444 863 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 DUSP6Q16828 381 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 DCAF4L1Q3SXM0 396 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 PPP4R3CPQ6ZMV5 832 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 ADGRD2Q7Z7M1 963 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 CDR2LQ86X02 465 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 GJD3Q8N144 294 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 IGSF21Q96ID5 467 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 GAD1Q99259 594 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 PLIN2Q99541 437 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 TMEM175Q9BSA9 504 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 TCHPQ9BT92 498 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 EMILIN2Q9BXX0 1053 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 EIF2AQ9BY44 585 aaKnown RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 KMT5AQ9NQR1 393 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 DAXXQ9UER7 740 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 BARX2Q9UMQ3 279 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 SSX2IPQ9Y2D8 614 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 GIT1Q9Y2X7 761 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 RBM19Q9Y4C8 960 aaKnown RBP10.06□□□□□ -0.8
HDAC6-232ENST00000489053 PCDHGC5Q9Y5F6 944 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 RALGAPA2Q2PPJ7 1873 aa10.06□□□□□ -0.8
HDAC6-232ENST00000489053 BRWD1Q9NSI6 2320 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 A0A1B0GUA9 196 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 MEIS3P2A8K0S8 358 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 H0YCG3 227 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 ACKR2O00590 384 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 LINC01565O15544 149 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 SLC26A4O43511 780 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 TBCAO75347 108 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 GALTP07902 379 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 IL9P15248 144 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 AKAP5P24588 427 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 GTF2F1P35269 517 aaKnown RBP eCLIP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 LONP1P36776 959 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 SLC11A1P49279 550 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 SCNN1GP51170 649 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 PEX3P56589 373 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 RAD51AP2Q09MP3 1159 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CUL4AQ13619 759 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CAMK1Q14012 370 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 DHX8Q14562 1220 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 TPRNQ4KMQ1 711 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 UBXN11Q5T124 520 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 ATF7IP2Q5U623 682 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CDCA2Q69YH5 1023 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CES5AQ6NT32 575 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 AGMOQ6ZNB7 445 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 MRPL43Q8N983 215 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 SMG8Q8ND04 991 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CASP10Q92851 521 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 BICD1Q96G01 975 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 INTS4Q96HW7 963 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 KIFC3Q9BVG8 833 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 COLEC11Q9BWP8 271 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 C1QTNF1Q9BXJ1 281 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 MRPL4Q9BYD3 311 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 NXF3Q9H4D5 531 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 NRDE2Q9H7Z3 1164 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 C17orf75Q9HAS0 396 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 MRPL17Q9NRX2 175 aaKnown RBP10.05□□□□□ -0.8
HDAC6-232ENST00000489053 CCDC39Q9UFE4 941 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 PRKAG3Q9UGI9 489 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 HES2Q9Y543 173 aa10.05□□□□□ -0.8
HDAC6-232ENST00000489053 FSCN2O14926 492 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 TBX10O75333 385 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 TADA2AO75478 443 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 FAM13AO94988 1023 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 PLA2G4BP0C869 781 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 KLRC2P26717 231 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 CEBPZQ03701 1054 aaKnown RBP10.04□□□□□ -0.8
HDAC6-232ENST00000489053 GRIK3Q13003 919 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 SF3A1Q15459 793 aaKnown RBP10.04□□□□□ -0.8
HDAC6-232ENST00000489053 ECM1Q16610 540 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 AMHR2Q16671 573 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 FAM187BQ17R55 369 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 CTC1Q2NKJ3 1217 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 ZNF568Q3ZCX4 644 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 RINT1Q6NUQ1 792 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 DDX53Q86TM3 631 aaKnown RBP10.04□□□□□ -0.8
HDAC6-232ENST00000489053 PPFIBP1Q86W92 1011 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 GPBP1Q86WP2 473 aa10.04□□□□□ -0.8
HDAC6-232ENST00000489053 ZNF280BQ86YH2 543 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms