RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 Q6ZVL8 140 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.08□□□□□ -1.28
USP48-209ENST00000487880 OR2I1PQ8NGU4 316 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 ZNF480Q8WV37 535 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 C20orf173Q96LM9 149 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 NUP88Q99567 741 aaPredicted RBP7.08□□□□□ -1.28
USP48-209ENST00000487880 ADI1Q9BV57 179 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 PLA2G12BQ9BX93 195 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 SERPINB13Q9UIV8 391 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 ZBTB21Q9ULJ3 1066 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 GIT1Q9Y2X7 761 aa7.08□□□□□ -1.28
USP48-209ENST00000487880 GPR42O15529 346 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 SEPT2Q15019 361 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 KRT40Q6A162 431 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 TAX1BP1Q86VP1 789 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 CMTM4Q8IZR5 234 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 PPM1NQ8N819 430 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 COA7Q96BR5 231 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 GNRHR2Q96P88 292 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 C12orf65Q9H3J6 166 aaKnown RBP7.07□□□□□ -1.28
USP48-209ENST00000487880 NELFAQ9H3P2 528 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 ZIM2Q9NZV7 527 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 TRPS1Q9UHF7 1281 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 IP6K2Q9UHH9 426 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 G3BP2Q9UN86 482 aaKnown RBP7.07□□□□□ -1.28
USP48-209ENST00000487880 IPPQ9Y573 584 aa7.07□□□□□ -1.28
USP48-209ENST00000487880 ZNF536O15090 1300 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 NPEPPSL1A6NEC2 478 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 AKR1B10O60218 316 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 GASTP01350 101 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 ITGB3P05106 788 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 GSPT1P15170 499 aaKnown RBP7.06□□□□□ -1.28
USP48-209ENST00000487880 GYPEP15421 78 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 EDNRBP24530 442 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 CRHR1P34998 444 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 RPS19P39019 145 aaKnown RBP7.06□□□□□ -1.28
USP48-209ENST00000487880 SLC16A1P53985 500 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 KIF23Q02241 960 aaPredicted RBP7.06□□□□□ -1.28
USP48-209ENST00000487880 LCE4AQ5TA78 99 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 TCTN3Q6NUS6 607 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 FAM180AQ6UWF9 173 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 NRG4Q8WWG1 115 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 HSPBAP1Q96EW2 488 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 BCO1Q9HAY6 547 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 GPRC5DQ9NZD1 345 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 ZNF180Q9UJW8 692 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 LIMCH1Q9UPQ0 1083 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 ANKRD6Q9Y2G4 727 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 SLC30A1Q9Y6M5 507 aa7.06□□□□□ -1.28
USP48-209ENST00000487880 A0A1W2PRX2 142 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 FAM171A2A8MVW0 826 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 PATE3B3GLJ2 98 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 ITGA10O75578 1167 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 RFPL1O75677 317 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 RAD17O75943 681 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 ZSCAN20P17040 1043 aaPredicted RBP7.05□□□□□ -1.28
USP48-209ENST00000487880 ECHS1P30084 290 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 DUSP2Q05923 314 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 NFIXQ14938 502 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 LIMS2Q7Z4I7 341 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 CIR1Q86X95 450 aaPredicted RBP7.05□□□□□ -1.28
USP48-209ENST00000487880 DNERQ8NFT8 737 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 OR7D4Q8NG98 312 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.05□□□□□ -1.28
USP48-209ENST00000487880 JPH3Q8WXH2 748 aaPredicted RBP7.05□□□□□ -1.28
USP48-209ENST00000487880 CSRNP2Q9H175 543 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 SAP30BPQ9UHR5 308 aaKnown RBP7.05□□□□□ -1.28
USP48-209ENST00000487880 DNM3Q9UQ16 869 aa7.05□□□□□ -1.28
USP48-209ENST00000487880 UBE2QL1A1L167 161 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 HTRA2O43464 458 aaPredicted RBP7.04□□□□□ -1.28
USP48-209ENST00000487880 FOXS1O43638 330 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 SCGB1D2O95969 90 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 PF4V1P10720 104 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 ADSLP30566 484 aaPredicted RBP7.04□□□□□ -1.28
USP48-209ENST00000487880 CASRP41180 1078 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 SLC6A9P48067 706 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 NOMO1Q15155 1222 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 GLB1LQ6UWU2 654 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 CXorf38Q8TB03 319 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 DPF2Q92785 391 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 PNMA8BQ9ULN7 279 aaPredicted RBP7.04□□□□□ -1.28
USP48-209ENST00000487880 SIK3Q9Y2K2 1263 aa7.04□□□□□ -1.28
USP48-209ENST00000487880 ADCY6O43306 1168 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 ENDOD1O94919 500 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 VCAM1P19320 739 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 SREBF1P36956 1147 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 NPEPPSP55786 919 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 LRRC41Q15345 812 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 RRP12Q5JTH9 1297 aaKnown RBP7.03□□□□□ -1.28
USP48-209ENST00000487880 TRMT2AQ8IZ69 625 aaKnown RBP7.03□□□□□ -1.28
USP48-209ENST00000487880 FUKQ8N0W3 1084 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 MIER2Q8N344 545 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 GIMAP8Q8ND71 665 aaPredicted RBP7.03□□□□□ -1.28
USP48-209ENST00000487880 BORCS6Q96GS4 357 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 TCF25Q9BQ70 676 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 PLA2G3Q9NZ20 509 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 RCAN3Q9UKA8 241 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 INTUQ9ULD6 942 aa7.03□□□□□ -1.28
USP48-209ENST00000487880 ZFR2Q9UPR6 939 aaKnown RBP7.03□□□□□ -1.28
USP48-209ENST00000487880 CCDC154A6NI56 674 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms