RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 AGPAT5Q9NUQ2 364 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 TYW1Q9NV66 732 aaKnown RBP18.8■□□□□ 0.6
VIM-205ENST00000485947 DBR1Q9UK59 544 aaKnown RBP18.8■□□□□ 0.6
VIM-205ENST00000485947 SYCE3A1L190 88 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 FGFR1P11362 822 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 PLCG1P19174 1290 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 RARRES1P49788 294 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 GATMP50440 423 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 NCBP1Q09161 790 aaKnown RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 CTC1Q2NKJ3 1217 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 TWF2Q6IBS0 349 aaKnown RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 MCPH1Q8NEM0 835 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 TMEM143Q96AN5 459 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 PGBD4Q96DM1 585 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 CCDC51Q96ER9 411 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 ZNF668Q96K58 619 aaPredicted RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 PNMA5Q96PV4 448 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 LRFN3Q9BTN0 628 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 CWH43Q9H720 699 aa18.79■□□□□ 0.6
VIM-205ENST00000485947 ALG13Q9NP73 1137 aaKnown RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 PUF60Q9UHX1 559 aaKnown RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 PIN4Q9Y237 131 aaKnown RBP18.79■□□□□ 0.6
VIM-205ENST00000485947 MYL1P05976 194 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 SRGAP2CP0DJJ0 459 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 SPATA31C1P0DKV0 1188 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 KCNQ1P51787 676 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 PTENP60484 403 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 CAMK1Q14012 370 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 POSTNQ15063 836 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 LRSAM1Q6UWE0 723 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 CATSPER3Q86XQ3 398 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 KSR1Q8IVT5 923 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 COLGALT1Q8NBJ5 622 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 RNF149Q8NC42 400 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 POF1BQ8WVV4 589 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 XPNPEP1Q9NQW7 623 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 FAM105AQ9NUU6 356 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 RNF19AQ9NV58 838 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 KIAA1468Q9P260 1216 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 HCN4Q9Y3Q4 1203 aa18.78■□□□□ 0.6
VIM-205ENST00000485947 ZBTB39O15060 712 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 FGF18O76093 207 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 ATF7P17544 494 aaPredicted RBP18.77■□□□□ 0.6
VIM-205ENST00000485947 FGFR4P22455 802 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 KCNA5P22460 613 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 ARL2P36404 184 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 KRT17Q04695 432 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 ZRSR1Q15695 479 aaKnown RBP18.77■□□□□ 0.6
VIM-205ENST00000485947 GLB1LQ6UWU2 654 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 THNSL1Q8IYQ7 743 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 ZNF558Q96NG5 402 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 CDCA3Q99618 268 aaPredicted RBP18.77■□□□□ 0.6
VIM-205ENST00000485947 LRRC27Q9C0I9 530 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 UBN1Q9NPG3 1134 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 STK39Q9UEW8 545 aa18.77■□□□□ 0.6
VIM-205ENST00000485947 BRWD1Q9NSI6 2320 aa18.77■□□□□ 0.59
VIM-205ENST00000485947 CNTNAP2Q9UHC6 1331 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 MED24O75448 989 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 CSDE1O75534 798 aaKnown RBP18.76■□□□□ 0.59
VIM-205ENST00000485947 ERLIN2O94905 339 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 IBSPP21815 317 aaPredicted RBP18.76■□□□□ 0.59
VIM-205ENST00000485947 AMPD3Q01432 767 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 CLLU1OSQ5K130 101 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 SASS6Q6UVJ0 657 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 KCNT2Q6UVM3 1135 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 MRPL10Q7Z7H8 261 aaKnown RBP18.76■□□□□ 0.59
VIM-205ENST00000485947 LARP4BQ92615 738 aaKnown RBP18.76■□□□□ 0.59
VIM-205ENST00000485947 RAD54LQ92698 747 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 PAGE5Q96GU1 130 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 TLR9Q9NR96 1032 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 KBTBD4Q9NVX7 518 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 SPG21Q9NZD8 308 aa18.76■□□□□ 0.59
VIM-205ENST00000485947 FNDC1Q4ZHG4 1894 aaPredicted RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 SMC2O95347 1197 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 CCDC192P0DO97 292 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 HOXA11P31270 313 aaPredicted RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 ALDH7A1P49419 539 aaKnown RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 HYAL1Q12794 435 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 BMS1Q14692 1282 aaKnown RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 LRRC55Q6ZSA7 311 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 EFHBQ8N7U6 833 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 RNF169Q8NCN4 708 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 PIGOQ8TEQ8 1089 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 FUCA2Q9BTY2 467 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 EPHX3Q9H6B9 360 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 NGRNQ9NPE2 291 aaKnown RBP18.75■□□□□ 0.59
VIM-205ENST00000485947 BLOC1S4Q9NUP1 217 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 KANSL3Q9P2N6 904 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 KIAA1024Q9UPX6 916 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 PCDHB2Q9Y5E7 798 aa18.75■□□□□ 0.59
VIM-205ENST00000485947 GRXCR2A6NFK2 248 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 DNAJB1P25685 340 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 ADAM15Q13444 863 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 PNOCQ13519 176 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 ECM1Q16610 540 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 NT5DC1Q5TFE4 455 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 PTCRAQ6ISU1 281 aaPredicted RBP18.74■□□□□ 0.59
VIM-205ENST00000485947 NOTUMQ6P988 496 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 SV2BQ7L1I2 683 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms