RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, human

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF1-205	ENST00000475993	SYNE4	Q8N205	404 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	NRG4	Q8WWG1	115 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	SCG3	Q8WXD2	468 aa	Known RBP	11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	GBP5	Q96PP8	586 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	ITM2B	Q9Y287	266 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	PODXL	O00592	558 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	STX2	P32856	288 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	CCNF	P41002	786 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	TEC	P42680	631 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	RASSF2	P50749	326 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	CLUL1	Q15846	466 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	ADGRA1	Q86SQ6	560 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	LARP4B	Q92615	738 aa	Known RBP	11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	C18orf8	Q96DM3	657 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	LRRC37B	Q96QE4	947 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	KANSL2	Q9H9L4	492 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	KCNK9	Q9NPC2	374 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	PCYOX1	Q9UHG3	505 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	PPP1R9A	Q9ULJ8	1098 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	SH3GLB1	Q9Y371	365 aa		11.31	□□□□□ -0.6
ABCF1-205	ENST00000475993	CYP2D7	A0A087X1C5	515 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	TMEM247	A6NEH6	219 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	NMT2	O60551	498 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	PHF2	O75151	1096 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	CTSW	P56202	376 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	PPAT	Q06203	517 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	CNPY1	Q3B7I2	92 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	KHDC1	Q4VXA5	237 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	SPDYA	Q5MJ70	313 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	HAPLN3	Q96S86	360 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	PITPNM3	Q9BZ71	974 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	STARD13	Q9Y3M8	1113 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	DYTN	A2CJ06	578 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	MAPK13	O15264	365 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	SPATA31D3	P0C874	917 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	BRAF	P15056	766 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	UCHL3	P15374	230 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	MARK3	P27448	753 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	CHRNA3	P32297	505 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	FOXN2	P32314	431 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	RRP1B	Q14684	758 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	GSTA3	Q16772	222 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	C4orf50	Q6ZRC1	276 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	SPATA31D4	Q6ZUB0	917 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	DZIP1	Q86YF9	867 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	RBM46	Q8TBY0	533 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ART4	Q93070	314 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	HIC2	Q96JB3	615 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	PNMA5	Q96PV4	448 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	SPATA16	Q9BXB7	569 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ZNF180	Q9UJW8	692 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	CASZ1	Q86V15	1759 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	UBR2	Q8IWV8	1755 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	NCAN	O14594	1321 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	DDX3X	O00571	662 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	LDHA	P00338	332 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ACTN1	P12814	892 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ALAS1	P13196	640 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	MOGS	Q13724	837 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	KPNB1	Q14974	876 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	DDB1	Q16531	1140 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ARHGEF18	Q6ZSZ5	1173 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	ZC3H18	Q86VM9	953 aa	Known RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	HELB	Q8NG08	1087 aa	Predicted RBP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	WDR60	Q8WVS4	1066 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	CCDC28B	Q9BUN5	200 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	OSGEP	Q9NPF4	335 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	INIP	Q9NRY2	104 aa		11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
ABCF1-205	ENST00000475993	P4HA2	O15460	535 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	DCTN3	O75935	186 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	CYP1A1	P04798	512 aa	Predicted RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	SLC5A1	P13866	664 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	CYP7A1	P22680	504 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	PHEX	P78562	749 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	STRN3	Q13033	797 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	LSAMP	Q13449	338 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	SLC44A4	Q53GD3	710 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	C7orf43	Q8WVR3	580 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	DDX12P	Q92771	950 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	ZNF653	Q96CK0	615 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	SRPK1	Q96SB4	655 aa	Known RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	DHX36	Q9H2U1	1008 aa	Known RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	CCDC87	Q9NVE4	849 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	ETNK2	Q9NVF9	386 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	SYNPO2	Q9UMS6	1093 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	MROH5	Q6ZUA9	1318 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	MAGEB6P1	A0A0J9YX57	407 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	MAGEB2	O15479	319 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	CCNT1	O60563	726 aa	Known RBP	11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	KRT13	P13646	458 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	PLCG2	P16885	1265 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	PTPN4	P29074	926 aa		11.29	□□□□□ -0.6
ABCF1-205	ENST00000475993	GALC	P54803	685 aa		11.29	□□□□□ -0.6

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