RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 NRDE2Q9H7Z3 1164 aa13.14□□□□□ -0.31
CLIP2-204ENST00000474962 XPNPEP1Q9NQW7 623 aa13.14□□□□□ -0.31
CLIP2-204ENST00000474962 TBC1D13Q9NVG8 400 aa13.14□□□□□ -0.31
CLIP2-204ENST00000474962 MUTYHQ9UIF7 546 aa13.14□□□□□ -0.31
CLIP2-204ENST00000474962 PPME1Q9Y570 386 aa13.14□□□□□ -0.31
CLIP2-204ENST00000474962 B4GALT3O60512 393 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 LYPLA2O95372 231 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 YEATS4O95619 227 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 GALTP07902 379 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 DDIT3P35638 169 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 LONP1P36776 959 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 CCT6AP40227 531 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 SYCE2Q6PIF2 218 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 MRPL10Q7Z7H8 261 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 VPS52Q8N1B4 723 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 KRI1Q8N9T8 703 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 BCL7CQ8WUZ0 217 aaPredicted RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 TCP11Q8WWU5 503 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 AUTS2Q8WXX7 1259 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 CDK5RAP3Q96JB5 506 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 RPGRIP1Q96KN7 1286 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 SPATA32Q96LK8 384 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 AK8Q96MA6 479 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 POP1Q99575 1024 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 MTRQ99707 1265 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 MRPL9Q9BYD2 267 aaKnown RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 SCAND2PQ9GZW5 306 aaPredicted RBP13.13□□□□□ -0.31
CLIP2-204ENST00000474962 GBP3Q9H0R5 595 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 ANKEF1Q9NU02 776 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 DNAJB4Q9UDY4 337 aa13.13□□□□□ -0.31
CLIP2-204ENST00000474962 PRR33A8MZF0 331 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 LOC730098B7Z3J9 87 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 CLASP2O75122 1294 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 DDHD2O94830 711 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SPATA31C1P0DKV0 1188 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 CA8P35219 290 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 ARL2P36404 184 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 TXLNAP40222 546 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 UBA7P41226 1012 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 ME1P48163 572 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SLC11A1P49279 550 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 PTENP60484 403 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 RNASELQ05823 741 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 MXD4Q14582 209 aaPredicted RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SMC1AQ14683 1233 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 PTPAQ15257 358 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 ZRSR1Q15695 479 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 ANKRD54Q6NXT1 300 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 IGSF22Q8N9C0 903 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 LINC00301Q8NCQ3 95 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SMG8Q8ND04 991 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 ASAP3Q8TDY4 903 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SNX29Q8TEQ0 813 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SUSD6Q92537 303 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 PGBD4Q96DM1 585 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 CALML4Q96GE6 196 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 TMEM169Q96HH4 297 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 IGSF21Q96ID5 467 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 CPB2Q96IY4 423 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 EIF2AQ9BY44 585 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 CDH22Q9UJ99 828 aa13.12□□□□□ -0.31
CLIP2-204ENST00000474962 SRPRBQ9Y5M8 271 aaKnown RBP13.12□□□□□ -0.31
CLIP2-204ENST00000474962 INO80B-WBP1J3KQ70 363 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 GAS2O43903 313 aaKnown RBP13.11□□□□□ -0.31
CLIP2-204ENST00000474962 PPP6R2O75170 966 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 POMCP01189 267 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 GLRA2P23416 452 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 RARRES1P49788 294 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 RAB27AP51159 221 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 HERC4Q5GLZ8 1057 aaPredicted RBP13.11□□□□□ -0.31
CLIP2-204ENST00000474962 KANK3Q6NY19 840 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 MAEAQ7L5Y9 396 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 DDX53Q86TM3 631 aaKnown RBP13.11□□□□□ -0.31
CLIP2-204ENST00000474962 CATSPER3Q86XQ3 398 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 POLR3CQ9BUI4 534 aaPredicted RBP13.11□□□□□ -0.31
CLIP2-204ENST00000474962 PHF7Q9BWX1 381 aaPredicted RBP13.11□□□□□ -0.31
CLIP2-204ENST00000474962 VN1R3Q9BXE9 311 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 TUFT1Q9NNX1 390 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 GPRC5CQ9NQ84 441 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 CCDC39Q9UFE4 941 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 HES2Q9Y543 173 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 MYH15Q9Y2K3 1946 aa13.11□□□□□ -0.31
CLIP2-204ENST00000474962 GOLGA6L4A6NEF3 574 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 TSPAN1O60635 241 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 MED24O75448 989 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 DGAT1O75907 488 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 ALDH2P05091 517 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 XRCC6P12956 609 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLIP2-204ENST00000474962 RPA1P27694 616 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 POU5F1BQ06416 359 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 CAPSQ13938 189 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 CBX2Q14781 532 aaPredicted RBP13.1□□□□□ -0.31
CLIP2-204ENST00000474962 IL17AQ16552 155 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 AMHR2Q16671 573 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 C12orf76Q8N812 135 aaPredicted RBP13.1□□□□□ -0.31
CLIP2-204ENST00000474962 URGCPQ8TCY9 931 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 FAM122AQ96E09 287 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 NACC1Q96RE7 527 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 NT5C3AQ9H0P0 336 aa13.1□□□□□ -0.31
CLIP2-204ENST00000474962 CSRNP2Q9H175 543 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms