RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 TMC5Q6UXY8 1006 aa9□□□□□ -0.97
USP48-207ENST00000471752 TRIM67Q6ZTA4 783 aa9□□□□□ -0.97
USP48-207ENST00000471752 SRGAP1Q7Z6B7 1085 aa9□□□□□ -0.97
USP48-207ENST00000471752 DDX53Q86TM3 631 aaKnown RBP9□□□□□ -0.97
USP48-207ENST00000471752 ALYREFQ86V81 257 aaKnown RBP9□□□□□ -0.97
USP48-207ENST00000471752 FAM177A1Q8N128 213 aaPredicted RBP9□□□□□ -0.97
USP48-207ENST00000471752 PSPC1Q8WXF1 523 aaKnown RBP9□□□□□ -0.97
USP48-207ENST00000471752 SLC7A3Q8WY07 619 aa9□□□□□ -0.97
USP48-207ENST00000471752 KLHL5Q96PQ7 755 aa9□□□□□ -0.97
USP48-207ENST00000471752 POLR3FQ9H1D9 316 aaPredicted RBP9□□□□□ -0.97
USP48-207ENST00000471752 NXF3Q9H4D5 531 aaKnown RBP9□□□□□ -0.97
USP48-207ENST00000471752 NGRNQ9NPE2 291 aaKnown RBP9□□□□□ -0.97
USP48-207ENST00000471752 TSHZ2Q9NRE2 1034 aa9□□□□□ -0.97
USP48-207ENST00000471752 TMEM221A6NGB7 291 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 PP2D1A8MPX8 630 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 INO80B-WBP1J3KQ70 363 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 M0R296 226 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 N4BP1O75113 896 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 BAG4O95429 457 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 NPTXRO95502 500 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 CNPP09543 421 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 CTSAP10619 480 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 RPL17P18621 184 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 NCLP19338 710 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 CDC25AP30304 524 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 MLH1P40692 756 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 CDC42EP1Q00587 391 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 RNASELQ05823 741 aaKnown RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 ANKRD1Q15327 319 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 CSPP1Q1MSJ5 1256 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 EEF1DP3Q658K8 133 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 OTUD6AQ7L8S5 288 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 COLGALT2Q8IYK4 626 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 SLFN12Q8IYM2 578 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 PRSS33Q8NF86 280 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 PPP2R3CQ969Q6 453 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 ASIC4Q96FT7 647 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 TMEM169Q96HH4 297 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 CDCA3Q99618 268 aaPredicted RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 MTRQ99707 1265 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 KIFC3Q9BVG8 833 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 GPR62Q9BZJ7 368 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 INO80BQ9C086 356 aaPredicted RBP8.99□□□□□ -0.97
USP48-207ENST00000471752 ADAM7Q9H2U9 754 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 RSAD1Q9HA92 442 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 LIMD1Q9UGP4 676 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 FAM50BQ9Y247 325 aa8.99□□□□□ -0.97
USP48-207ENST00000471752 NEMFO60524 1076 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 RFPL2O75678 378 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 BRD1O95696 1058 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 ALDH2P05091 517 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 ITGA4P13612 1032 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 XBP1P17861 261 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 PPM1AP35813 382 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 OR1G1P47890 313 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 KIAA0319Q5VV43 1072 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 PDE12Q6L8Q7 609 aaKnown RBP8.98□□□□□ -0.97
USP48-207ENST00000471752 ZNF710Q8N1W2 664 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 WASF1Q92558 559 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 PBXIP1Q96AQ6 731 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 MRPL9Q9BYD2 267 aaKnown RBP8.98□□□□□ -0.97
USP48-207ENST00000471752 CSRNP2Q9H175 543 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 ANKEF1Q9NU02 776 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 LIMCH1Q9UPQ0 1083 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 FAN1Q9Y2M0 1017 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 PCDHB6Q9Y5E3 794 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 MYO10Q9HD67 2058 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 SPTBN4Q9H254 2564 aa8.98□□□□□ -0.97
USP48-207ENST00000471752 A0A1B0GUA9 196 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 TEX28O15482 410 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 MEFVO15553 781 aaPredicted RBP8.97□□□□□ -0.97
USP48-207ENST00000471752 ASAP2O43150 1006 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 ADAM12O43184 909 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 LIG1P18858 919 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 CLCN4P51793 760 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 NHLH1Q02575 133 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 DSC1Q08554 894 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 NT5DC1Q5TFE4 455 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 PADI6Q6TGC4 694 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 CD300LGQ6UXG3 332 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 KCNK18Q7Z418 384 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 PALB2Q86YC2 1186 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 IFNLR1Q8IU57 520 aaPredicted RBP8.97□□□□□ -0.97
USP48-207ENST00000471752 NOSTRINQ8IVI9 506 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 GLYCTKQ8IVS8 523 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 KREMEN2Q8NCW0 462 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 FBXO18Q8NFZ0 1043 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 RSAD2Q8WXG1 361 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 C8orf76Q96K31 380 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 POP1Q99575 1024 aaKnown RBP8.97□□□□□ -0.97
USP48-207ENST00000471752 JPH2Q9BR39 696 aaPredicted RBP8.97□□□□□ -0.97
USP48-207ENST00000471752 FZD8Q9H461 694 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 SNTG2Q9NY99 539 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 HCN4Q9Y3Q4 1203 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 IRAK3Q9Y616 596 aa8.97□□□□□ -0.97
USP48-207ENST00000471752 RIF1Q5UIP0 2472 aaKnown RBP8.97□□□□□ -0.97
USP48-207ENST00000471752 ZNF292O60281 2723 aa8.96□□□□□ -0.97
USP48-207ENST00000471752 LRRIQ4A6NIV6 560 aa8.96□□□□□ -0.98
USP48-207ENST00000471752 E9PMD0 336 aa8.96□□□□□ -0.98
USP48-207ENST00000471752 PTGESO14684 152 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms