RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 VSIG10L2P0DP72 767 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 SCP2P22307 547 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 NANOS3P60323 173 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 HDAC1Q13547 482 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 TOB2Q14106 344 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 DDX46Q7L014 1031 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 MSL3Q8N5Y2 521 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 ZG16BQ96DA0 208 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 C16orf92Q96LL3 132 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 NEUROD6Q96NK8 337 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 AGAP2Q99490 1192 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 ARPC5LQ9BPX5 153 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 ZHX3Q9H4I2 956 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 GPRC5BQ9NZH0 403 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 DMRT1Q9Y5R6 373 aa5.91□□□□□ -1.46
CCDC88A-210ENST00000468534 FOSP01100 380 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 LDHCP07864 332 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 JMJD7P0C870 316 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 PURAQ00577 322 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 ADCY2Q08462 1091 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 KCTD2Q14681 263 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 GAGE13Q4V321 117 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 FNDC3BQ53EP0 1204 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 L1TD1Q5T7N2 865 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 ESRP1Q6NXG1 681 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 BMP8AQ7Z5Y6 402 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 DNAJC10Q8IXB1 793 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 C7orf31Q8N865 590 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 TSR2Q969E8 191 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 RNPC3Q96LT9 517 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 CDC5LQ99459 802 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 ELF4Q99607 663 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 IFT122Q9HBG6 1241 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 TOMM22Q9NS69 142 aa5.9□□□□□ -1.46
CCDC88A-210ENST00000468534 CAND2O75155 1236 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 PEX11BO96011 259 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 TGM1P22735 817 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 RABGGTBP53611 331 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 BCAR1P56945 870 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 SMAD3P84022 425 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 EPHA7Q15375 998 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 SYCP2LQ5T4T6 812 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 NME9Q86XW9 330 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 RAVER1Q8IY67 606 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 ZNF512Q96ME7 567 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 POFUT1Q9H488 388 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 MTG2Q9H4K7 406 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 B4GALT6Q9UBX8 382 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 SYNPO2Q9UMS6 1093 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 XDHP47989 1333 aa5.89□□□□□ -1.47
CCDC88A-210ENST00000468534 KLRG2A4D1S0 409 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 MFAP3LO75121 409 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 STC2O76061 302 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 JUNP05412 331 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 FAM200BP0CF97 657 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 KRT4P19013 534 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 SDSP20132 328 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 FLT3P36888 993 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 KIR2DL3P43628 341 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 NPEPPSP55786 919 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 SQSTM1Q13501 440 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 RAPGEF1Q13905 1077 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 CDCA2Q69YH5 1023 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 TIGD7Q6NT04 549 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 UNQ6494/PRO21346Q6UXR6 183 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 UBE2R2Q712K3 238 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 OTUD6BQ8N6M0 293 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 ATL2Q8NHH9 583 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 SLC25A43Q8WUT9 341 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 RTF1Q92541 710 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 MNTQ99583 582 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 PRRX2Q99811 253 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 MYL10Q9BUA6 226 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 C14orf93Q9H972 538 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 CHST12Q9NRB3 414 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 H2AFY2Q9P0M6 372 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 LZTS1Q9Y250 596 aa5.88□□□□□ -1.47
CCDC88A-210ENST00000468534 CBX4O00257 560 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 PPFIA2O75334 1257 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 PRPF6O94906 941 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 GNAT2P19087 354 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 HK1P19367 917 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 PTGS2P35354 604 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 BRD3Q15059 726 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 FAM214AQ32MH5 1076 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 TMEM95Q3KNT9 176 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 CFAP100Q494V2 611 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 RABL3Q5HYI8 236 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 LAIR1Q6GTX8 287 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 MFSD5Q6N075 450 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 Q6ZPA2 131 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 PHYKPLQ8IUZ5 450 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 WDR75Q8IWA0 830 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 ULK2Q8IYT8 1036 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 CMTM4Q8IZR5 234 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 TTC30BQ8N4P2 665 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 ZNF276Q8N554 614 aa5.87□□□□□ -1.47
CCDC88A-210ENST00000468534 PAF1Q8N7H5 531 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms