RNA–Protein interactions for RNA: ENST00000467762.2

RIF1-209, Transcript of replication timing regulatory factor 1, human

TSL 4

Gene RIF1, Length 545 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-209	ENST00000467762	RHOXF2	Q9BQY4	288 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	PAGR1	Q9BTK6	254 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	MMTAG2	Q9BU76	263 aa	Known RBP	5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	DHX36	Q9H2U1	1008 aa	Known RBP	5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	SEMA6B	Q9H3T3	888 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	ZHX3	Q9H4I2	956 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	KANSL2	Q9H9L4	492 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	PLCB1	Q9NQ66	1216 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	BLOC1S4	Q9NUP1	217 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	AGPAT5	Q9NUQ2	364 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	TMEM260	Q9NX78	707 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	MAP3K20	Q9NYL2	800 aa	Known RBP	5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	AIPL1	Q9NZN9	384 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	VPS18	Q9P253	973 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	DDX25	Q9UHL0	483 aa	Known RBP	5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	FBXL5	Q9UKA1	691 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	INTU	Q9ULD6	942 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	PCDHA12	Q9UN75	941 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	MAPK8IP1	Q9UQF2	711 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	EFR3B	Q9Y2G0	817 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	ATP8A1	Q9Y2Q0	1164 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	COL4A1	P02462	1669 aa		5.74	□□□□□ -1.49
RIF1-209	ENST00000467762	GTPBP10	A4D1E9	387 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SMIM22	K7EJ46	135 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	GNB5	O14775	395 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	GIPC1	O14908	333 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ZBTB5	O15062	677 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CETN3	O15182	167 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CALU	O43852	315 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	HSF2BP	O75031	334 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	UFL1	O94874	794 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	TRIM37	O94972	964 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	BPNT1	O95861	308 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	IGHA1	P01876	353 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ATP1A1	P05023	1023 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CCDC172	P0C7W6	258 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	VEGFA	P15692	232 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	KLRK1	P26718	216 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CDC25A	P30304	524 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	LMAN1	P49257	510 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CDKN1C	P49918	316 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	KIF11	P52732	1056 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ZNF543	Q08ER8	600 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NFIX	Q14938	502 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SUZ12	Q15022	739 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NAB2	Q15742	525 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CDC37	Q16543	378 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NFIL3	Q16649	462 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PTPN21	Q16825	1174 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ASTE1	Q2TB18	679 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	FAM26F	Q5R3K3	315 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	MFSD14B	Q5SR56	506 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	EMC10	Q5UCC4	262 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	TTC39B	Q5VTQ0	682 aa	Predicted RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NCAPH2	Q6IBW4	605 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PDXDC1	Q6P996	788 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	RRAGA	Q7L523	313 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ERMP1	Q7Z2K6	904 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	VPS36	Q86VN1	386 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	C2CD5	Q86YS7	1000 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CREG2	Q8IUH2	290 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	MAPKAPK5	Q8IW41	473 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NOA1	Q8NC60	698 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	KIAA0895	Q8NCT3	520 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SNX29	Q8TEQ0	813 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	FAM20A	Q96MK3	541 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PNMA5	Q96PV4	448 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PIGS	Q96S52	555 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	OSBPL9	Q96SU4	736 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	MMS19	Q96T76	1030 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SELENOO	Q9BVL4	669 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	CCDC113	Q9H0I3	377 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	ZNF700	Q9H0M5	742 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	MMRN2	Q9H8L6	949 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PSTPIP2	Q9H939	334 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SLC39A2	Q9NP94	309 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	PANK4	Q9NVE7	773 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	NYAP2	Q9P242	653 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SERPINB13	Q9UIV8	391 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	HPCAL4	Q9UM19	191 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	BCS1L	Q9Y276	419 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	DIS3	Q9Y2L1	958 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SCIN	Q9Y6U3	715 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	LRRC37A	A6NMS7	1700 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	BAZ2B	Q9UIF8	2168 aa	Known RBP	5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	SNED1	Q8TER0	1413 aa		5.73	□□□□□ -1.49
RIF1-209	ENST00000467762	THSD7A	Q9UPZ6	1657 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	LOXHD1	Q8IVV2	1947 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	GREB1L	Q9C091	1923 aa	Predicted RBP	5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	ELOA3C	A0A087WX78	387 aa	Predicted RBP	5.72	□□□□□ -1.49
RIF1-209	ENST00000467762		A0A0A6YYK5	440 aa	Predicted RBP	5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	FRMD3	A2A2Y4	597 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	GOLGA6B	A6NDN3	693 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	ERICH4	A6NGS2	130 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	ELOA3D	A6NLF2	546 aa	Predicted RBP	5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	PP2D1	A8MPX8	630 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	TRAF5	O00463	557 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	PDXK	O00764	312 aa		5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	SLC16A3	O15427	465 aa	Known RBP	5.72	□□□□□ -1.49
RIF1-209	ENST00000467762	SHOX2	O60902	331 aa	Predicted RBP	5.72	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms