RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	SYT2	Q8N9I0	419 aa	Predicted RBP	13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	NECAB3	Q96P71	396 aa	Predicted RBP	13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	CASD1	Q96PB1	797 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	BPIFA3	Q9BQP9	254 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	TIPIN	Q9BVW5	301 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	TRAIP	Q9BWF2	469 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	TRIM9	Q9C026	710 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	TMEM117	Q9H0C3	514 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	AAAS	Q9NRG9	546 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	BLOC1S4	Q9NUP1	217 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	RNF19A	Q9NV58	838 aa		13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	TYW1	Q9NV66	732 aa	Known RBP	13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	DBR1	Q9UK59	544 aa	Known RBP	13.3	□□□□□ -0.28
CTNS-205	ENST00000467663	GAS2	O43903	313 aa	Known RBP	13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	EOMES	O95936	686 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	SFPQ	P23246	707 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	AFM	P43652	599 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	POLG	P54098	1239 aa	Predicted RBP	13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	CYP4A11	Q02928	519 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	CTC1	Q2NKJ3	1217 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	ZNF598	Q86UK7	904 aa	Known RBP	13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	KSR1	Q8IVT5	923 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	TPH2	Q8IWU9	490 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	FAM200A	Q8TCP9	573 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	CWH43	Q9H720	699 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	IFT122	Q9HBG6	1241 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	ANKEF1	Q9NU02	776 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	PCDHB12	Q9Y5F1	795 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	COL4A3BP	Q9Y5P4	624 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	MYH11	P35749	1972 aa		13.29	□□□□□ -0.28
CTNS-205	ENST00000467663	ZBTB39	O15060	712 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	RHOBTB3	O94955	611 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	RPN1	P04843	607 aa	Known RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	PLA2G4B	P0C869	781 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	ATF7	P17544	494 aa	Predicted RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	UBE3A	Q05086	875 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	HYAL1	Q12794	435 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	MORC3	Q14149	939 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	PUS10	Q3MIT2	529 aa	Known RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	COBLL1	Q53SF7	1204 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	XKR9	Q5GH70	373 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	SPOUT1	Q5T280	376 aa	Known RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	LRRC55	Q6ZSA7	311 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	UNC13D	Q70J99	1090 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	COLGALT1	Q8NBJ5	622 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	POF1B	Q8WVV4	589 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	TCP11	Q8WWU5	503 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	PRPF31	Q8WWY3	499 aa	Known RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	PSPC1	Q8WXF1	523 aa	Known RBP	13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	NLRP4	Q96MN2	994 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	MTR	Q99707	1265 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	HCST	Q9UBK5	93 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	KCNG1	Q9UIX4	513 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	BRWD1	Q9NSI6	2320 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	XIRP2	A4UGR9	3374 aa		13.28	□□□□□ -0.28
CTNS-205	ENST00000467663	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.27	□□□□□ -0.28
CTNS-205	ENST00000467663	GRXCR2	A6NFK2	248 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	SMTNL1	A8MU46	457 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	ASAP2	O43150	1006 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	FGF18	O76093	207 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	KIF20A	O95235	890 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	LAG3	P18627	525 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	ERCC5	P28715	1186 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	IRS1	P35568	1242 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	LTBR	P36941	435 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	PHKA2	P46019	1235 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	ZNF165	P49910	485 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	SLC12A3	P55017	1021 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	LAMTOR4	Q0VGL1	99 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	STIM1	Q13586	685 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	MCM6	Q14566	821 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	EMC2	Q15006	297 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	CLLU1OS	Q5K130	101 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	ZNF658	Q5TYW1	1059 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	SRGAP1	Q7Z6B7	1085 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	CCDC65	Q8IXS2	484 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	ABI1	Q8IZP0	508 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	RSPH1	Q8WYR4	309 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	TMEM143	Q96AN5	459 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	XPNPEP1	Q9NQW7	623 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	CLDND1	Q9NY35	253 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663	MAN1B1	Q9UKM7	699 aa		13.27	□□□□□ -0.29
CTNS-205	ENST00000467663		H3BQ06	376 aa	Predicted RBP	13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	ZNF623	O75123	536 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	SKI	P12755	728 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	TPM4	P67936	248 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	ASIC1	P78348	528 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	PLCB3	Q01970	1234 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	ADAM15	Q13444	863 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	CUL4B	Q13620	913 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	ECM1	Q16610	540 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	ANO6	Q4KMQ2	910 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	POTEG	Q6S5H5	508 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	CATSPER4	Q7RTX7	472 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	GAS2L3	Q86XJ1	694 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	LRRC43	Q8N309	656 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	RNF169	Q8NCN4	708 aa		13.26	□□□□□ -0.29
CTNS-205	ENST00000467663	DDX12P	Q92771	950 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms