RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 PRPF31Q8WWY3 499 aaKnown RBP16.19■□□□□ 0.18
SMC1A-204ENST00000463684 PSPC1Q8WXF1 523 aaKnown RBP16.19■□□□□ 0.18
SMC1A-204ENST00000463684 COLEC11Q9BWP8 271 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 PRKD2Q9BZL6 878 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 VPS54Q9P1Q0 977 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 ZFP37Q9Y6Q3 630 aaPredicted RBP16.19■□□□□ 0.18
SMC1A-204ENST00000463684 NUMBLQ9Y6R0 609 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 FRYLO94915 3013 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 CACNA1AO00555 2505 aa16.19■□□□□ 0.18
SMC1A-204ENST00000463684 ARL5CA6NH57 179 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 TGM5O43548 720 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 DKC1O60832 514 aaKnown RBP eCLIP16.18■□□□□ 0.18
SMC1A-204ENST00000463684 ERLIN2O94905 339 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 SDHBP21912 280 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 STARD6P59095 220 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 NCBP1Q09161 790 aaKnown RBP16.18■□□□□ 0.18
SMC1A-204ENST00000463684 HTR4Q13639 388 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 RSPO4Q2I0M5 234 aaPredicted RBP16.18■□□□□ 0.18
SMC1A-204ENST00000463684 PLA2G4FQ68DD2 849 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 B3GNT9Q6UX72 402 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 Q6ZUG5 572 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 SLC26A6Q9BXS9 759 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 RNF26Q9BY78 433 aaPredicted RBP16.18■□□□□ 0.18
SMC1A-204ENST00000463684 BCO2Q9BYV7 579 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 FOXQ1Q9C009 403 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.18■□□□□ 0.18
SMC1A-204ENST00000463684 CHST7Q9NS84 486 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 NCDNQ9UBB6 729 aa16.18■□□□□ 0.18
SMC1A-204ENST00000463684 CYP3A7-CYP3A51PA0A087WV96 503 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 ASAP2O43150 1006 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 LAMTOR5O43504 91 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 PAPLNO95428 1278 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 FSHRP23945 695 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 CYP3A7P24462 503 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 QARSP47897 775 aaKnown RBP16.17■□□□□ 0.18
SMC1A-204ENST00000463684 NPEPPSP55786 919 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 CREMQ03060 361 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 LAMTOR4Q0VGL1 99 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 USP41Q3LFD5 358 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 ZNF528Q3MIS6 628 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 GLYCTKQ8IVS8 523 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 RNF168Q8IYW5 571 aaPredicted RBP16.17■□□□□ 0.18
SMC1A-204ENST00000463684 GPR161Q8N6U8 529 aaKnown RBP16.17■□□□□ 0.18
SMC1A-204ENST00000463684 SUMF1Q8NBK3 374 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 SMG8Q8ND04 991 aaKnown RBP16.17■□□□□ 0.18
SMC1A-204ENST00000463684 BRF1Q92994 677 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 TMEM143Q96AN5 459 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 CEP170P1Q96L14 293 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 GAD1Q99259 594 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 MINDY3Q9H8M7 445 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 SH3GLB2Q9NR46 395 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 SPATA6Q9NWH7 488 aaPredicted RBP16.17■□□□□ 0.18
SMC1A-204ENST00000463684 FNIP2Q9P278 1114 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 PPME1Q9Y570 386 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 IPPQ9Y573 584 aa16.17■□□□□ 0.18
SMC1A-204ENST00000463684 KANSL1LA0AUZ9 987 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 POTEMA6NI47 508 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 TDP2O95551 362 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 EFEMP2O95967 443 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 GLULP15104 373 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 AXLP30530 894 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 MLH1P40692 756 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 RFC5P40937 340 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 GPC5P78333 572 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 DSC1Q08554 894 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 SNW1Q13573 536 aaKnown RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 VARS2Q5ST30 1063 aaKnown RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 POTEGQ6S5H5 508 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 GPR65Q8IYL9 337 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 HACE1Q8IYU2 909 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 RNF149Q8NC42 400 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 ST13P5Q8NFI4 369 aaPredicted RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 TCP11Q8WWU5 503 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 ATRIPQ8WXE1 791 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 SECISBP2LQ93073 1101 aaKnown RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 CNTNAP3BQ96NU0 1288 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 CNTNAP3Q9BZ76 1288 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 SLKQ9H2G2 1235 aaPredicted RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 FBXO4Q9UKT5 387 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 DNAH14Q0VDD8 3507 aa16.16■□□□□ 0.18
SMC1A-204ENST00000463684 EP300Q09472 2414 aaPredicted RBP16.16■□□□□ 0.18
SMC1A-204ENST00000463684 C2orf16Q68DN1 1984 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 SPTLC1O15269 473 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 LRRN2O75325 713 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 ZMYND10O75800 440 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 CPA1P15085 419 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 SCNN1GP51170 649 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 PCBP1Q15365 356 aaKnown RBP eCLIP16.15■□□□□ 0.18
SMC1A-204ENST00000463684 NOTUMQ6P988 496 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 LILRA6Q6PI73 481 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 MAML2Q8IZL2 1156 aaPredicted RBP16.15■□□□□ 0.18
SMC1A-204ENST00000463684 ETNPPLQ8TBG4 499 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 B3GALT6Q96L58 329 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 YTHDC1Q96MU7 727 aaKnown RBP16.15■□□□□ 0.18
SMC1A-204ENST00000463684 RNF39Q9H2S5 420 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 DHX33Q9H6R0 707 aaKnown RBP16.15■□□□□ 0.18
SMC1A-204ENST00000463684 MIOSQ9NXC5 875 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 PCDHA4Q9UN74 947 aa16.15■□□□□ 0.18
SMC1A-204ENST00000463684 F8W810 466 aa16.14■□□□□ 0.17
SMC1A-204ENST00000463684 P4HBP07237 508 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms