RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TAS2R14Q9NYV8 317 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 MYH9P35579 1960 aaKnown RBP16.29■□□□□ 0.2
LDLR-202ENST00000455727 KRIT1O00522 736 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 DDX3YO15523 660 aaKnown RBP16.28■□□□□ 0.2
LDLR-202ENST00000455727 DGAT1O75907 488 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 GZMAP12544 262 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 GPC3P51654 580 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 MFAP3P55082 362 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 TMEM132BQ14DG7 1078 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 ZSCAN26Q16670 478 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 LEKR1Q6ZMV7 388 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 PALB2Q86YC2 1186 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 CBWD2Q8IUF1 395 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 CYP39A1Q9NYL5 469 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 KCNG1Q9UIX4 513 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 MYPNQ86TC9 1320 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 DOCK5Q9H7D0 1870 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 LOC285556D6RIA3 1793 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 ESYT3A0FGR9 886 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA6CA6NDK9 693 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 RTN2O75298 545 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 FAM153BP0C7A2 387 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA6DP0CG33 693 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 FAM153CQ494X1 144 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 FAM76AQ8TAV0 307 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 SLC20A1Q8WUM9 679 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 SHC3Q92529 594 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 RUFY1Q96T51 708 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 ACAD9Q9H845 621 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 JPH1Q9HDC5 661 aaPredicted RBP16.28■□□□□ 0.2
LDLR-202ENST00000455727 SEPT11Q9NVA2 429 aaKnown RBP16.28■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA6AQ9NYA3 693 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 FAM153AQ9UHL3 310 aa16.28■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA8IPA6NC78 632 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA8JA6NMD2 632 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 SPATA31C2B4DYI2 1134 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 FTLP02792 175 aaPredicted RBP16.27■□□□□ 0.2
LDLR-202ENST00000455727 GPC5P78333 572 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 PPP2R5EQ16537 467 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 BRDTQ58F21 947 aaPredicted RBP16.27■□□□□ 0.2
LDLR-202ENST00000455727 C11orf63Q6NUN7 778 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 MAATS1Q7Z4T9 603 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 CCDC26Q8TAB7 109 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 BSNDQ8WZ55 320 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 KLRG1Q96E93 195 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 NAP1L3Q99457 506 aaPredicted RBP16.27■□□□□ 0.2
LDLR-202ENST00000455727 AP1M1Q9BXS5 423 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 HOXC10Q9NYD6 342 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 SLC9A2Q9UBY0 812 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 NOCTQ9UK39 431 aaKnown RBP16.27■□□□□ 0.2
LDLR-202ENST00000455727 BCS1LQ9Y276 419 aa16.27■□□□□ 0.2
LDLR-202ENST00000455727 H0YCG3 227 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 MTA2O94776 668 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 GARTP22102 1010 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 ERVK-9P63128 1117 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 PTPROQ16827 1216 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 GNPTABQ3T906 1256 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 NOL9Q5SY16 702 aaKnown RBP16.27■□□□□ 0.19
LDLR-202ENST00000455727 ANGEL2Q5VTE6 544 aaKnown RBP16.27■□□□□ 0.19
LDLR-202ENST00000455727 SWSAP1Q6NVH7 229 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 ABHD15Q6UXT9 468 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 TRMT1LQ7Z2T5 733 aaKnown RBP16.27■□□□□ 0.19
LDLR-202ENST00000455727 CD302Q8IX05 232 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 RPUSD2Q8IZ73 545 aaKnown RBP16.27■□□□□ 0.19
LDLR-202ENST00000455727 EPS8L1Q8TE68 723 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 KCNN1Q92952 543 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 KREMEN1Q96MU8 473 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 A1CFQ9NQ94 594 aaKnown RBP16.27■□□□□ 0.19
LDLR-202ENST00000455727 COG5Q9UP83 839 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 CD2APQ9Y5K6 639 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 PPP2R3BQ9Y5P8 575 aa16.27■□□□□ 0.19
LDLR-202ENST00000455727 MIF4GDA9UHW6 222 aaKnown RBP16.26■□□□□ 0.19
LDLR-202ENST00000455727 CHRNB2P17787 502 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 SCP2P22307 547 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 MAP2K1Q02750 393 aaPredicted RBP16.26■□□□□ 0.19
LDLR-202ENST00000455727 CFAP58Q5T655 872 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 SLC39A4Q6P5W5 647 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 C1orf131Q8NDD1 294 aaKnown RBP16.26■□□□□ 0.19
LDLR-202ENST00000455727 SEC14L1Q92503 715 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 SEMA4DQ92854 862 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 ZIM3Q96PE6 472 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 KIFC3Q9BVG8 833 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 TMOD4Q9NZQ9 345 aa16.26■□□□□ 0.19
LDLR-202ENST00000455727 SHOX2O60902 331 aaPredicted RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 IVLP07476 585 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 HSPA9P38646 679 aaKnown RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 ACTR2P61160 394 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 FBXL13Q8NEE6 735 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 HELQQ8TDG4 1101 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 MORC4Q8TE76 937 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 SAAL1Q96ER3 474 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 DDX47Q9H0S4 455 aaKnown RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 CYP26B1Q9NR63 512 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 LCTP09848 1927 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 SGPL1O95470 568 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 ECHS1P30084 290 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 CYP24A1Q07973 514 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 PRPF4BQ13523 1007 aaKnown RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 TRADDQ15628 312 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 XKR3Q5GH77 459 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms