RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 SEMA4DQ92854 862 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 PSMD1Q99460 953 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 NCAPGQ9BPX3 1015 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 NUCKS1Q9H1E3 243 aaKnown RBP16.8■□□□□ 0.28
SCARF1-203ENST00000434376 PPANQ9NQ55 473 aaKnown RBP16.8■□□□□ 0.28
SCARF1-203ENST00000434376 RDXP35241 583 aaKnown RBP16.8■□□□□ 0.28
SCARF1-203ENST00000434376 FLT3P36888 993 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 SEC24CP53992 1094 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 CDK17Q00537 523 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 TMEM132BQ14DG7 1078 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 SCARA5Q6ZMJ2 495 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 CCDC91Q7Z6B0 441 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 CEP57Q86XR8 500 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 LRRC71Q8N4P6 559 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 CPA5Q8WXQ8 436 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 VIPAS39Q9H9C1 493 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 FRMPD4Q14CM0 1322 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 ADM5C9JUS6 153 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 OPA1O60313 960 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 BACE1P56817 501 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 GJC2Q5T442 439 aaPredicted RBP16.8■□□□□ 0.28
SCARF1-203ENST00000434376 HEMGNQ9BXL5 484 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 ADAM33Q9BZ11 813 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 SNX24Q9Y343 169 aa16.8■□□□□ 0.28
SCARF1-203ENST00000434376 WDR64B1ANS9 1081 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 SLCO1A2P46721 670 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 TRAF1Q13077 416 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 ORC1Q13415 861 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 NNTQ13423 1086 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 COBLL1Q53SF7 1204 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 ZBTB41Q5SVQ8 909 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 TRAPPC12Q8WVT3 735 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 MRRFQ96E11 262 aaKnown RBP16.79■□□□□ 0.28
SCARF1-203ENST00000434376 ZIM3Q96PE6 472 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 CEP89Q96ST8 783 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 ATP8A1Q9Y2Q0 1164 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 PDE4DIPQ5VU43 2346 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 FERP16591 822 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 AARSP49588 968 aaKnown RBP eCLIP16.79■□□□□ 0.28
SCARF1-203ENST00000434376 LIG4P49917 911 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 PRKCEQ02156 737 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 MEI1Q5TIA1 1274 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 TMEM117Q9H0C3 514 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 A1CFQ9NQ94 594 aaKnown RBP16.79■□□□□ 0.28
SCARF1-203ENST00000434376 LAMA3Q16787 3333 aa16.79■□□□□ 0.28
SCARF1-203ENST00000434376 HGSO14964 777 aaPredicted RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 EIF3HO15372 352 aaKnown RBP eCLIP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 PLS3P13797 630 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 PLTPP55058 493 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 FKBP1AP62942 108 aaKnown RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 IFT88Q13099 833 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 IFT20Q8IY31 132 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 ZNF653Q96CK0 615 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 ACSF2Q96CM8 615 aaPredicted RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 FNBP1Q96RU3 617 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 ELP3Q9H9T3 547 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 MMP14P50281 582 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 PSMC5P62195 406 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 FAM83AQ86UY5 434 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 TARS2Q9BW92 718 aaKnown RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 PCDHA10Q9Y5I2 948 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 ADGRA3Q8IWK6 1321 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 LAMA2P24043 3122 aaKnown RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 BCRP11274 1271 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 PTPRAP18433 802 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 TNNC1P63316 161 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 DRP2Q13474 957 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 EAPPQ56P03 285 aaPredicted RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 TREML2Q5T2D2 321 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 TMEM63BQ5T3F8 832 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 POLR3FQ9H1D9 316 aaPredicted RBP16.78■□□□□ 0.28
SCARF1-203ENST00000434376 COG5Q9UP83 839 aa16.78■□□□□ 0.28
SCARF1-203ENST00000434376 E7EVH7 732 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 ADSSP30520 456 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 ERVK-9P63128 1117 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 SP2Q02086 613 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 USP38Q8NB14 1042 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 CLMNQ96JQ2 1002 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 RIT2Q99578 217 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 STK33Q9BYT3 514 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 CD248Q9HCU0 757 aa16.77■□□□□ 0.28
SCARF1-203ENST00000434376 ACTN3Q08043 901 aaPredicted RBP16.77■□□□□ 0.27
SCARF1-203ENST00000434376 HP1BP3Q5SSJ5 553 aaPredicted RBP16.77■□□□□ 0.27
SCARF1-203ENST00000434376 CAPN12Q6ZSI9 719 aa16.77■□□□□ 0.27
SCARF1-203ENST00000434376 CCDC50Q8IVM0 306 aa16.77■□□□□ 0.27
SCARF1-203ENST00000434376 PGRMC1O00264 195 aaKnown RBP16.76■□□□□ 0.27
SCARF1-203ENST00000434376 ACTR2P61160 394 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 IFFO1Q0D2I5 559 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 RNF10Q8N5U6 811 aaKnown RBP16.76■□□□□ 0.27
SCARF1-203ENST00000434376 ALG3Q92685 438 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 NEUROG2Q9H2A3 272 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 CTNND1O60716 968 aaKnown RBP16.76■□□□□ 0.27
SCARF1-203ENST00000434376 NOP9Q86U38 636 aaKnown RBP16.76■□□□□ 0.27
SCARF1-203ENST00000434376 PCDHB18PQ96TA0 734 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 AGPAT1Q99943 283 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 ERVK-5Q9HDB9 667 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 JPH1Q9HDC5 661 aaPredicted RBP16.76■□□□□ 0.27
SCARF1-203ENST00000434376 ALG6Q9Y672 507 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 TCRBV7S2A1N4TA0A589 114 aa16.76■□□□□ 0.27
SCARF1-203ENST00000434376 HSD17B4P51659 736 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms