RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 UBXN11Q5T124 520 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 ATF7IP2Q5U623 682 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 ZPBP2Q6X784 338 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 SLC24A5Q71RS6 500 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 C9IYK1 514 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 N4BP3O15049 544 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 PIGRP01833 764 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 DEFB103AP81534 67 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 SLC27A1Q6PCB7 646 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 CDR2LQ86X02 465 aaPredicted RBP32.19■■■□□ 2.74
USP42-202ENST00000404008 ACCSQ96QU6 501 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 TNFSF13BQ9Y275 285 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 PRPF6O94906 941 aaKnown RBP32.19■■■□□ 2.74
USP42-202ENST00000404008 AMHP03971 560 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 FAM189BP81408 668 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 ZNF507Q8TCN5 953 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 SCFD1Q8WVM8 642 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 BICD1Q96G01 975 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 PTPRHQ9HD43 1115 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 SLC4A7Q9Y6M7 1214 aa32.19■■■□□ 2.74
USP42-202ENST00000404008 UBE4BO95155 1302 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 A0A0U1RQF3 1178 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 HNRNPDLO14979 420 aaKnown RBP32.18■■■□□ 2.74
USP42-202ENST00000404008 PROZP22891 400 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 EEF1DP3Q658K8 133 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 TDHQ8IZJ6 230 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 EIF2AQ9BY44 585 aaKnown RBP32.18■■■□□ 2.74
USP42-202ENST00000404008 FAM105AQ9NUU6 356 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 KIAA1468Q9P260 1216 aa32.18■■■□□ 2.74
USP42-202ENST00000404008 HOXD13P35453 343 aa32.17■■■□□ 2.74
USP42-202ENST00000404008 BMT2Q1RMZ1 405 aa32.17■■■□□ 2.74
USP42-202ENST00000404008 MAN1B1Q9UKM7 699 aa32.17■■■□□ 2.74
USP42-202ENST00000404008 EXOC7Q9UPT5 735 aa32.17■■■□□ 2.74
USP42-202ENST00000404008 ABLIM1O14639 778 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 TOM1L1O75674 476 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 LIG4P49917 911 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 RAB27AP51159 221 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 ECHDC2Q86YB7 292 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 MYOCDQ8IZQ8 938 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 CRIPAKQ8N1N5 446 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 SLC9A7Q96T83 725 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 IKZF4Q9H2S9 585 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 TMEM206Q9H813 350 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 ZMYM2Q9UBW7 1377 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 GDAQ9Y2T3 454 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 PCDHB2Q9Y5E7 798 aa32.16■■■□□ 2.74
USP42-202ENST00000404008 NPTXRO95502 500 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 SKIP12755 728 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 ZNF658Q5TYW1 1059 aaPredicted RBP32.15■■■□□ 2.74
USP42-202ENST00000404008 SLC39A4Q6P5W5 647 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 MPZL3Q6UWV2 235 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 PHOSPHO2Q8TCD6 241 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 TOP1MTQ969P6 601 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 ADPGKQ9BRR6 497 aa32.15■■■□□ 2.74
USP42-202ENST00000404008 ZNF623O75123 536 aa32.14■■■□□ 2.74
USP42-202ENST00000404008 SYCP3Q8IZU3 236 aa32.14■■■□□ 2.74
USP42-202ENST00000404008 ZBTB45Q96K62 511 aaPredicted RBP32.14■■■□□ 2.74
USP42-202ENST00000404008 TRIM6Q9C030 488 aaPredicted RBP32.14■■■□□ 2.74
USP42-202ENST00000404008 ELAC1Q9H777 363 aaKnown RBP32.14■■■□□ 2.74
USP42-202ENST00000404008 ANKFY1Q9P2R3 1169 aa32.14■■■□□ 2.74
USP42-202ENST00000404008 GBF1Q92538 1859 aa32.14■■■□□ 2.74
USP42-202ENST00000404008 ANKRD63C9JTQ0 380 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 ATF7P17544 494 aaPredicted RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 DCAF4L1Q3SXM0 396 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 ZNF568Q3ZCX4 644 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 TMCO2Q7Z6W1 182 aaPredicted RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 ZNF598Q86UK7 904 aaKnown RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 NPAS4Q8IUM7 802 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 SMG8Q8ND04 991 aaKnown RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 GTPBP4Q9BZE4 634 aaKnown RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 CDT1Q9H211 546 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 RNF216Q9NWF9 866 aaPredicted RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 TMEM161AQ9NX61 479 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 COLQQ9Y215 455 aaPredicted RBP32.13■■■□□ 2.73
USP42-202ENST00000404008 IPPQ9Y573 584 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 LAMA3Q16787 3333 aa32.13■■■□□ 2.73
USP42-202ENST00000404008 TISP43B9A030 160 aa32.12■■■□□ 2.73
USP42-202ENST00000404008 ATP2A2P16615 1042 aaKnown RBP32.12■■■□□ 2.73
USP42-202ENST00000404008 IBSPP21815 317 aaPredicted RBP32.12■■■□□ 2.73
USP42-202ENST00000404008 APBB1IPQ7Z5R6 666 aaPredicted RBP32.12■■■□□ 2.73
USP42-202ENST00000404008 MRPL10Q7Z7H8 261 aaKnown RBP32.12■■■□□ 2.73
USP42-202ENST00000404008 NELFCDQ8IXH7 590 aa32.12■■■□□ 2.73
USP42-202ENST00000404008 SMYD4Q8IYR2 804 aaPredicted RBP32.12■■■□□ 2.73
USP42-202ENST00000404008 TCHPQ9BT92 498 aa32.12■■■□□ 2.73
USP42-202ENST00000404008 HAPLN2Q9GZV7 340 aa32.12■■■□□ 2.73
USP42-202ENST00000404008 CLDN3O15551 220 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 EOMESO95936 686 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 MCL1Q07820 350 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 MORC3Q14149 939 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 NOLC1Q14978 699 aaKnown RBP eCLIP32.11■■■□□ 2.73
USP42-202ENST00000404008 KLHL40Q2TBA0 621 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 ISM2Q6H9L7 571 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 ZBTB33Q86T24 672 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 PCDHB7Q9Y5E2 793 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 STYXL1Q9Y6J8 313 aa32.11■■■□□ 2.73
USP42-202ENST00000404008 A0A1W2PPC1 479 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 BIN1O00499 593 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 UPP2O95045 317 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 STAG3L1P0CL83 205 aa32.1■■■□□ 2.73
USP42-202ENST00000404008 MCF2P10911 925 aa32.1■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms