RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CYP26A1O43174 497 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 EZRP15311 586 aaKnown RBP22.57■■□□□ 1.2
CTCF-202ENST00000401394 PSEN1P49768 467 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 EIF3BP55884 814 aaKnown RBP22.57■■□□□ 1.2
CTCF-202ENST00000401394 KYNUQ16719 465 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 TLDC1Q6P9B6 456 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ZNF720Q7Z2F6 126 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 SPIRE2Q8WWL2 714 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 PGM2Q96G03 612 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 LBHD1Q9BQE6 289 aaPredicted RBP22.57■■□□□ 1.2
CTCF-202ENST00000401394 O00370 1275 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 EYA4O95677 639 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 CYP3A4P08684 503 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ATP2B4P23634 1241 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 PEX5P50542 639 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 NCALDP61601 193 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 BMT2Q1RMZ1 405 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ANKS4BQ8N8V4 417 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ZSWIM1Q9BR11 485 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ECT2Q9H8V3 914 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 ARHGEF10LQ9HCE6 1279 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 CHST7Q9NS84 486 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 DONSONQ9NYP3 566 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 TTC7AQ9ULT0 858 aaPredicted RBP22.57■■□□□ 1.2
CTCF-202ENST00000401394 COL5A3P25940 1745 aaPredicted RBP22.57■■□□□ 1.2
CTCF-202ENST00000401394 NHSQ6T4R5 1651 aa22.57■■□□□ 1.2
CTCF-202ENST00000401394 PLIN4Q96Q06 1357 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 ANP32DO95626 131 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 RBM5P52756 815 aaKnown RBP eCLIP22.56■■□□□ 1.2
CTCF-202ENST00000401394 SH3BP5LQ7L8J4 393 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 NOP9Q86U38 636 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 DHX38Q92620 1227 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 HSD17B14Q9BPX1 270 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 PARVGQ9HBI0 331 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 LRRC4BQ9NT99 713 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 ADAMTSL1Q8N6G6 1762 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 SLC16A3O15427 465 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 RRP1BQ14684 758 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 RBM26Q5T8P6 1007 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 CCDC174Q6PII3 467 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 FAM47EQ6ZV65 393 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 FBXO11Q86XK2 927 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 ARHGEF2Q92974 986 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 DBNDD1Q9H9R9 158 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 CEP83Q9Y592 693 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 FRMPD4Q14CM0 1322 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 SNX3O60493 162 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 NDUFB10O96000 172 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 SPOCK2Q92563 424 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 MRRFQ96E11 262 aaKnown RBP22.56■■□□□ 1.2
CTCF-202ENST00000401394 INTUQ9ULD6 942 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 FRMD4BQ9Y2L6 1034 aa22.56■■□□□ 1.2
CTCF-202ENST00000401394 SPOPO43791 374 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 PIAS1O75925 651 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 CERKLQ49MI3 558 aaPredicted RBP22.55■■□□□ 1.2
CTCF-202ENST00000401394 VSTM1Q6UX27 236 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 FITM2Q8N6M3 262 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 C3orf20Q8ND61 904 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 C8orf37Q96NL8 207 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 AMNQ9BXJ7 453 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 DIAPH2O60879 1101 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 ARP10275 920 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 OTOP1Q7RTM1 612 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 HEMGNQ9BXL5 484 aa22.55■■□□□ 1.2
CTCF-202ENST00000401394 ZNF219Q9P2Y4 722 aaPredicted RBP22.55■■□□□ 1.2
CTCF-202ENST00000401394 A0A1W2PRG0 241 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 C21orf2O43822 256 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 SERPINB2P05120 415 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 COILP38432 576 aaPredicted RBP22.54■■□□□ 1.2
CTCF-202ENST00000401394 ECE1P42892 770 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 MGAT5Q09328 741 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 BFSP1Q12934 665 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 SIX1Q15475 284 aaPredicted RBP22.54■■□□□ 1.2
CTCF-202ENST00000401394 ZYXQ15942 572 aaKnown RBP22.54■■□□□ 1.2
CTCF-202ENST00000401394 LRCH2Q5VUJ6 765 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 ERICH1Q86X53 443 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 IGLV3-22A0A075B6J6 115 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 ICA1Q05084 483 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 DAW1Q8N136 415 aa22.54■■□□□ 1.2
CTCF-202ENST00000401394 PAIP2Q9BPZ3 127 aaKnown RBP22.54■■□□□ 1.2
CTCF-202ENST00000401394 ASAP2O43150 1006 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 SREBF1P36956 1147 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 Q4G0T1 1027 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 CAPN12Q6ZSI9 719 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 ANKLE1Q8NAG6 615 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 CCDC127Q96BQ5 260 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 CENPTQ96BT3 561 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 NEBLO76041 1014 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 NT5C2P49902 561 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 CGB2Q6NT52 195 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 PPM1KQ8N3J5 372 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 NUP85Q9BW27 656 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 TOPORSQ9NS56 1045 aaPredicted RBP22.53■■□□□ 1.2
CTCF-202ENST00000401394 FAM187AA6NFU0 413 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 MYBL1P10243 752 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 CTNNA2P26232 953 aa22.53■■□□□ 1.2
CTCF-202ENST00000401394 MAP2K1Q02750 393 aaPredicted RBP22.53■■□□□ 1.2
CTCF-202ENST00000401394 DHX34Q14147 1143 aaKnown RBP22.53■■□□□ 1.2
CTCF-202ENST00000401394 HS2ST1Q7LGA3 356 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms