RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HAUS6Q7Z4H7 955 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 FBXO11Q86XK2 927 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 ZBED8Q8IZ13 594 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 DENND6BQ8NEG7 585 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 SNX29Q8TEQ0 813 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 FBXO41Q8TF61 875 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC127Q96BQ5 260 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RMDN1Q96DB5 314 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 FAM49AQ9H0Q0 323 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-202ENST00000375405 WBP11Q9Y2W2 641 aaKnown RBP4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RNF103-CHMP3A0A140T963 221 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 SH3D21A4FU49 640 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 TTC34A8MYJ7 566 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 TCP10L2B9ZVM9 353 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RNF103O00237 685 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 KITP10721 976 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 TCP1P17987 556 aaKnown RBP4.91□□□□□ -1.62
SCN1A-202ENST00000375405 CHMP24386 653 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 SOX6P35712 828 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 STAT2P52630 851 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RUNX1T1Q06455 604 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 STX4Q12846 297 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 MPP2Q14168 576 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RC3H1Q5TC82 1133 aaKnown RBP4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RPTNQ6XPR3 784 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 TAS1R3Q7RTX0 852 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 HEXDCQ8WVB3 486 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 RBM41Q96IZ5 413 aaKnown RBP4.91□□□□□ -1.62
SCN1A-202ENST00000375405 COQ7Q99807 217 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 ADA2Q9NZK5 511 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 MID2Q9UJV3 735 aa4.91□□□□□ -1.62
SCN1A-202ENST00000375405 LSM1O15116 133 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CHP2O43745 196 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 NEMFO60524 1076 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SASH3O75995 380 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 BMP15O95972 392 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 EGFRP00533 1210 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 TFRCP02786 760 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 LYNP07948 512 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 FGRP09769 529 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HIST1H2AGP0C0S8 130 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ATF2P15336 505 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HIST1H2ADP20671 130 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HSD17B2P37059 387 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 MECP2P51608 486 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 DRG2P55039 364 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 DLG1Q12959 904 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ZSWIM7Q19AV6 140 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CERCAMQ5T4B2 595 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HIST2H2AA3Q6FI13 130 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ZCCHC7Q8N3Z6 543 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CARD6Q9BX69 1037 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 PCMTD2Q9NV79 361 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 PCDHB8Q9UN66 801 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ANKRD6Q9Y2G4 727 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 IPPQ9Y573 584 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SNX14Q9Y5W7 946 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CADPSQ9ULU8 1353 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 GRID2IPA4D2P6 1211 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 VPS4BO75351 444 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SERPINA3P01011 423 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CCR4P51679 360 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 TFAMQ00059 246 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 PPIDQ08752 370 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SLFN5Q08AF3 891 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 COX10Q12887 443 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ARHGEF7Q14155 803 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HSDL1Q3SXM5 330 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HLA-DQA1Q5Y7H0 255 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 FAAH2Q6GMR7 532 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC31Q6UY01 552 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 RD3Q7Z3Z2 195 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 HPS6Q86YV9 775 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SYCE1Q8N0S2 351 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SNX31Q8N9S9 440 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ASAP3Q8TDY4 903 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 GRK7Q8WTQ7 553 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 DDI1Q8WTU0 396 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC59Q96AG4 307 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 VPS39Q96JC1 886 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CDHR1Q96JP9 859 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SOWAHDA6NJG2 315 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 K7ENM7 598 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 ANGPT2O15123 496 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 PPM1AP35813 382 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 RAD23BP54727 409 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 EIF4A1P60842 406 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 NFKB2Q00653 900 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 POLD3Q15054 466 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 WLSQ5T9L3 541 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 DAB2IPQ5VWQ8 1189 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CEP68Q76N32 757 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 RNF44Q7L0R7 432 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 SLC13A5Q86YT5 568 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 MMGT1Q8N4V1 131 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 DPF1Q92782 380 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 BHMTQ93088 406 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 COA7Q96BR5 231 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CLIP3Q96DZ5 547 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 PHACTR1Q9C0D0 580 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms