RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 MYCT1Q8N699 235 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 SENP7Q9BQF6 1050 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 AGO4Q9HCK5 861 aaKnown RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 AIPL1Q9NZN9 384 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 DNAH12Q6ZR08 3092 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 A6NJR5 290 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 PDE2AO00408 941 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 AKAP3O75969 853 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 MYL3P08590 195 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 TCP1P17987 556 aaKnown RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 CST5P28325 142 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 NKX3-2P78367 333 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 SETQ01105 290 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 ITGB3BPQ13352 177 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 SLC18A3Q16572 532 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 CCDC70Q6NSX1 233 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 NIPA1Q7RTP0 329 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 NECAB2Q7Z6G3 386 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 PCSK9Q8NBP7 692 aaKnown RBP16.91■□□□□ 0.3
CCDC40-202ENST00000374876 C11orf49Q9H6J7 331 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 SUGCTQ9HAC7 445 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 PLCB1Q9NQ66 1216 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 HYOU1Q9Y4L1 999 aa16.91■□□□□ 0.3
CCDC40-202ENST00000374876 DDX39AO00148 427 aaKnown RBP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 EIF3DO15371 548 aaKnown RBP eCLIP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 MMP3P08254 477 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 COL6A1P12109 1028 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 CPT1AP50416 773 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 ATN1P54259 1190 aaPredicted RBP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 ENOX2Q16206 610 aaKnown RBP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 EXOC3L4Q17RC7 722 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 MAP9Q49MG5 647 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 TCERG1LQ5VWI1 586 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 C1orf186Q6ZWK4 172 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 CREG2Q8IUH2 290 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 EMID1Q96A84 441 aaPredicted RBP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 VTI1AQ96AJ9 217 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 NACC1Q96RE7 527 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 OSBPL9Q96SU4 736 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 TSEN34Q9BSV6 310 aaKnown RBP16.9■□□□□ 0.3
CCDC40-202ENST00000374876 PARVGQ9HBI0 331 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 SALL4Q9UJQ4 1053 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 PHF24Q9UPV7 400 aa16.9■□□□□ 0.3
CCDC40-202ENST00000374876 A0A1W2PQ45 241 aaPredicted RBP16.89■□□□□ 0.29
CCDC40-202ENST00000374876 A0A1W2PQY0 241 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 IPO5O00410 1097 aaKnown RBP16.89■□□□□ 0.29
CCDC40-202ENST00000374876 CLIC2O15247 247 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 BUB1O43683 1085 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 ACTN1P12814 892 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 CAPN2P17655 700 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 SLC9A1P19634 815 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 MUTP22033 750 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 C2orf54Q08AI8 447 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 CASP8Q14790 479 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 METTL7BQ6UX53 244 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 PPP1R13LQ8WUF5 828 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 SPAG5Q96R06 1193 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 TEKT3Q9BXF9 490 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 ZEB2O60315 1214 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 UCHL3P15374 230 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 KCNA1Q09470 495 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 CCDC181Q5TID7 509 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 NFRKBQ6P4R8 1299 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 PPTC7Q8NI37 304 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 COG1Q8WTW3 980 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 UNC45AQ9H3U1 944 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 PDE11AQ9HCR9 933 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 PCDHB13Q9Y5F0 798 aa16.89■□□□□ 0.29
CCDC40-202ENST00000374876 MOXD2PA6NHM9 499 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 ZBTB39O15060 712 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 DHX15O43143 795 aaKnown RBP16.88■□□□□ 0.29
CCDC40-202ENST00000374876 PON1P27169 355 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 NMT1P30419 496 aaKnown RBP16.88■□□□□ 0.29
CCDC40-202ENST00000374876 CASP4P49662 377 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 EPHA7Q15375 998 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 BRDTQ58F21 947 aaPredicted RBP16.88■□□□□ 0.29
CCDC40-202ENST00000374876 KLHDC7AQ5VTJ3 777 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 GBP6Q6ZN66 633 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 STXBP4Q6ZWJ1 553 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 PSMB7Q99436 277 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 SEL1LQ9UBV2 794 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 ADAMTS1Q9UHI8 967 aa16.88■□□□□ 0.29
CCDC40-202ENST00000374876 A0A087X0T9 212 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 NOP56O00567 594 aaKnown RBP16.87■□□□□ 0.29
CCDC40-202ENST00000374876 TGFB1I1O43294 461 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 FAM228BP0C875 321 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 PURAQ00577 322 aaKnown RBP16.87■□□□□ 0.29
CCDC40-202ENST00000374876 ITIH3Q06033 890 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 NAB2Q15742 525 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 ZNF572Q7Z3I7 529 aaPredicted RBP16.87■□□□□ 0.29
CCDC40-202ENST00000374876 GPR20Q99678 358 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 ACBD3Q9H3P7 528 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 JPH1Q9HDC5 661 aaPredicted RBP16.87■□□□□ 0.29
CCDC40-202ENST00000374876 KCND2Q9NZV8 630 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 BZW2Q9Y6E2 419 aaKnown RBP16.87■□□□□ 0.29
CCDC40-202ENST00000374876 H3BQF6 201 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 NCK2O43639 380 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 ZNF286BP0CG31 522 aa16.87■□□□□ 0.29
CCDC40-202ENST00000374876 CXCR5P32302 372 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms