RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 COILP38432 576 aaPredicted RBP17.62■□□□□ 0.41
SDC4-201ENST00000372733 UBXN2AP68543 259 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 TNFAIP8L3Q5GJ75 292 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 BTNL9Q6UXG8 535 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 OTOP1Q7RTM1 612 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 EXOC3L1Q86VI1 746 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 SYCP3Q8IZU3 236 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 PCDHB18PQ96TA0 734 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 TUFT1Q9NNX1 390 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 MLXIPLQ9NP71 852 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 ACP6Q9NPH0 428 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 FGFR1OP2Q9NVK5 253 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 FOXO6A8MYZ6 492 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 ACSL3O95573 720 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 RARAP10276 462 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 RARGP13631 454 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 KCNJ2P63252 427 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 GPC5P78333 572 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 TLDC1Q6P9B6 456 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 FMNL3Q8IVF7 1028 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 DHX37Q8IY37 1157 aaKnown RBP17.62■□□□□ 0.41
SDC4-201ENST00000372733 DYDC1Q8WWB3 177 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 ART4Q93070 314 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 COA1Q9GZY4 146 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 PCIF1Q9H4Z3 704 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 UBE4BO95155 1302 aa17.62■□□□□ 0.41
SDC4-201ENST00000372733 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 SNX3O60493 162 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 BCRP11274 1271 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 GBP1P32455 592 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 MMP14P50281 582 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 ZNF131P52739 623 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 SLMAPQ14BN4 828 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 SLC13A5Q86YT5 568 aaPredicted RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 TEKT1Q969V4 418 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 STMN4Q9H169 189 aaPredicted RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 SUGT1Q9Y2Z0 365 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 SIPA1L1O43166 1804 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 TAF1LQ8IZX4 1826 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 QSER1Q2KHR3 1735 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 SPOPO43791 374 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 ECM2O94769 699 aaPredicted RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 GCLMP48507 274 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 NCALDP61601 193 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 PPP3CAQ08209 521 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 SIX1Q15475 284 aaPredicted RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 TAOK1Q7L7X3 1001 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 KIRREL3Q8IZU9 778 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 CDC42EP4Q9H3Q1 356 aaKnown RBP17.61■□□□□ 0.41
SDC4-201ENST00000372733 PASKQ96RG2 1323 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 LTBP1Q14766 1721 aa17.61■□□□□ 0.41
SDC4-201ENST00000372733 TCP11X1B4DZS4 312 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 PSMD10O75832 226 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 SGPL1O95470 568 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 OAS1P00973 400 aaKnown RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 DLATP10515 647 aaKnown RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 CLNS1AP54105 237 aaKnown RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 MFSD5Q6N075 450 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 STXBP4Q6ZWJ1 553 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 CROCCP2Q86T23 111 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 CD101Q93033 1021 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 DNAJC17Q9NVM6 304 aaKnown RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 CTNNAL1Q9UBT7 734 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 SEL1LQ9UBV2 794 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 TMEM120BA0PK00 339 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 TULP1O00294 542 aaPredicted RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 GGPS1O95749 300 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 CYP3A4P08684 503 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 PDE6CP51160 858 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 MYO1EQ12965 1108 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 CYP1B1Q16678 543 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 MAEAQ7L5Y9 396 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 NOP9Q86U38 636 aaKnown RBP17.6■□□□□ 0.41
SDC4-201ENST00000372733 RPS6KC1Q96S38 1066 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 AAASQ9NRG9 546 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 L3MBTL1Q9Y468 752 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 SMCHD1A6NHR9 2005 aa17.6■□□□□ 0.41
SDC4-201ENST00000372733 PPEF1O14829 653 aaPredicted RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 CHRNB2P17787 502 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 RFX1P22670 979 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 NSMFQ6X4W1 530 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 SPICE1Q8N0Z3 855 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 ANKRD42Q8N9B4 389 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 ZSWIM2Q8NEG5 633 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 ARHGEF2Q92974 986 aaKnown RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 TAOK3Q9H2K8 898 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 MTUS1Q9ULD2 1270 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 USP15Q9Y4E8 981 aaPredicted RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 CFAP73A6NFT4 308 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 K7ENM7 598 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 GAS7O60861 476 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 HIP1RO75146 1068 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 RTN2O75298 545 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 GYS1P13807 737 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 GBP2P32456 591 aaPredicted RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 ZKSCAN8Q15776 578 aaPredicted RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 RNF207Q6ZRF8 634 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 DAW1Q8N136 415 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 ZNF564Q8TBZ8 553 aaPredicted RBP17.59■□□□□ 0.41
SDC4-201ENST00000372733 EPS8L1Q8TE68 723 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms