RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TAC1P20366 129 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 SDC4P31431 198 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 DSTYKQ6XUX3 929 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 RUBCNQ92622 972 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 RNPC3Q96LT9 517 aaKnown RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 KCNF1Q9H3M0 494 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 VIPAS39Q9H9C1 493 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 SUN2Q9UH99 717 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ARHGEF28Q8N1W1 1705 aaKnown RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SIGLEC1Q9BZZ2 1709 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SPDYE2BA6NHP3 402 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 FAM196BA6NMK8 535 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 NVLO15381 856 aaKnown RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SPDYE6P0CI01 402 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SOX5P35711 763 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 ATP11CQ8NB49 1132 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 GRAMD1AQ96CP6 724 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SUDS3Q9H7L9 328 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 FEM1BQ9UK73 627 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 NRKQ7Z2Y5 1582 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 ABCB11O95342 1321 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 GPS1Q13098 491 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 BYSLQ13895 437 aaKnown RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SLC18A3Q16572 532 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 C12orf60Q5U649 245 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 KIAA1841Q6NSI8 718 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 RASGRP2Q7LDG7 609 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 ZC3H18Q86VM9 953 aaKnown RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 ADGRF4Q8IZF3 695 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 FBXL13Q8NEE6 735 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 BTBD6Q96KE9 485 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 LRRC1Q9BTT6 524 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 FAM49AQ9H0Q0 323 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 KRT82Q9NSB4 513 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 DCTN4Q9UJW0 460 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 CFAP73A6NFT4 308 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 SRGNP10124 158 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 PAPOLAP51003 745 aaKnown RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 FXR1P51114 621 aaKnown RBP eCLIP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 ARFIP2P53365 341 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 GIMAP8Q8ND71 665 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-203ENST00000372407 PPP1R16BQ96T49 567 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 IP6K2Q9UHH9 426 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 PPME1Q9Y570 386 aa12.16□□□□□ -0.46
PTPRF-203ENST00000372407 EMSYQ7Z589 1322 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 GOLGA8MH3BSY2 632 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PAMP19021 973 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 ANXA13P27216 316 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 STAT3P40763 770 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 INPP1P49441 399 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 BCAR1P56945 870 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PSMC5P62195 406 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 TNFAIP2Q03169 654 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 NFX1Q12986 1120 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 ZNF568Q3ZCX4 644 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PRPF38AQ8NAV1 312 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 IGDCC4Q8TDY8 1250 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 SCG3Q8WXD2 468 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 CENPKQ9BS16 269 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 MTFR1LQ9H019 292 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 VPS11Q9H270 941 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 HOXC10Q9NYD6 342 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 SLC9A2Q9UBY0 812 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PCSK1NQ9UHG2 260 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 ITIH6Q6UXX5 1313 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 CHRNA5P30532 468 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 GNA15P30679 374 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 FMR1Q06787 632 aaKnown RBP eCLIP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 HAUS6Q7Z4H7 955 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 GIPC2Q8TF65 315 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 TGS1Q96RS0 853 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 LXNQ9BS40 222 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 UBN1Q9NPG3 1134 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 RNF146Q9NTX7 359 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 SENP1Q9P0U3 644 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 A0A0G2JLW4 131 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 EYA4O95677 639 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 KRT14P02533 472 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 MYBL1P10243 752 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PSMC1P62191 440 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 EPHA7Q15375 998 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 ACAD11Q709F0 780 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 TSC22D3Q99576 134 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 EIF2AK1Q9BQI3 630 aaKnown RBP12.15□□□□□ -0.46
PTPRF-203ENST00000372407 BFARQ9NZS9 450 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 MYO3BQ8WXR4 1341 aa12.15□□□□□ -0.46
PTPRF-203ENST00000372407 PPARGP37231 505 aaPredicted RBP12.15□□□□□ -0.47
PTPRF-203ENST00000372407 IREB2P48200 963 aaKnown RBP12.15□□□□□ -0.47
PTPRF-203ENST00000372407 TTC39CQ8N584 583 aa12.15□□□□□ -0.47
PTPRF-203ENST00000372407 SNF8Q96H20 258 aa12.15□□□□□ -0.47
PTPRF-203ENST00000372407 RAVER2Q9HCJ3 691 aaKnown RBP12.15□□□□□ -0.47
PTPRF-203ENST00000372407 MEGF6O75095 1541 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 RHOBTB3O94955 611 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 SMARCA1P28370 1054 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PHKA2P46019 1235 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 PDIA2Q13087 525 aaKnown RBP12.14□□□□□ -0.47
PTPRF-203ENST00000372407 NR1I3Q14994 352 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 C1orf146Q5VVC0 180 aa12.14□□□□□ -0.47
PTPRF-203ENST00000372407 RWDD4Q6NW29 188 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms