RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C1orf210Q8IVY1 113 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 GPR152Q8TDT2 470 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 PSPC1Q8WXF1 523 aaKnown RBP15.49■□□□□ 0.07
VPS29-201ENST00000360579 RIN2Q8WYP3 895 aaPredicted RBP15.49■□□□□ 0.07
VPS29-201ENST00000360579 GJA10Q969M2 543 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 SHDQ96IW2 340 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 MYADMQ96S97 322 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 SLC2A4RGQ9NR83 387 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS29-201ENST00000360579 VPS54Q9P1Q0 977 aa15.49■□□□□ 0.07
VPS29-201ENST00000360579 PRG3Q9Y2Y8 225 aaPredicted RBP15.49■□□□□ 0.07
VPS29-201ENST00000360579 ZFP37Q9Y6Q3 630 aaPredicted RBP15.49■□□□□ 0.07
VPS29-201ENST00000360579 GAS2O43903 313 aaKnown RBP15.48■□□□□ 0.07
VPS29-201ENST00000360579 RFPL2O75678 378 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 SP9P0CG40 484 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 LAMP2P13473 410 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 ITGA4P13612 1032 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 AFF1P51825 1210 aaKnown RBP15.48■□□□□ 0.07
VPS29-201ENST00000360579 DSG1Q02413 1049 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 CREMQ03060 361 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 SPECC1Q5M775 1068 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 DCLRE1AQ6PJP8 1040 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 MOXD1Q6UVY6 613 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 COLGALT2Q8IYK4 626 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 GPR65Q8IYL9 337 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 RNF168Q8IYW5 571 aaPredicted RBP15.48■□□□□ 0.07
VPS29-201ENST00000360579 BRF1Q92994 677 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 ZNF707Q96C28 371 aaPredicted RBP15.48■□□□□ 0.07
VPS29-201ENST00000360579 CCDC51Q96ER9 411 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 SLC26A6Q9BXS9 759 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 MARCH5Q9NX47 278 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 DLGAP2Q9P1A6 1054 aa15.48■□□□□ 0.07
VPS29-201ENST00000360579 WDR81Q562E7 1941 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 MED19A0JLT2 244 aaPredicted RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 ANHXE9PGG2 379 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 ASAP2O43150 1006 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 EFEMP2O95967 443 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 DCNP07585 359 aaKnown RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 SRGAP2CP0DJJ0 459 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 IFNAR1P17181 557 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 AXLP30530 894 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 HOXA11P31270 313 aaPredicted RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 RFC5P40937 340 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 QARSP47897 775 aaKnown RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 NCBP1Q09161 790 aaKnown RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 BMP2KLQ5H9B9 411 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 UBXN11Q5T124 520 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 PLA2G4FQ68DD2 849 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 TAS1R1Q7RTX1 841 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 FBXL16Q8N461 479 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 ETNPPLQ8TBG4 499 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 TCP11Q8WWU5 503 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 PRPF31Q8WWY3 499 aaKnown RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 CEP170P1Q96L14 293 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 COLEC11Q9BWP8 271 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 NT5C3AQ9H0P0 336 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 DHX33Q9H6R0 707 aaKnown RBP15.47■□□□□ 0.07
VPS29-201ENST00000360579 PCDHA4Q9UN74 947 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 C2orf16Q68DN1 1984 aa15.47■□□□□ 0.07
VPS29-201ENST00000360579 NCOR2Q9Y618 2525 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 ARL5CA6NH57 179 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 ERLIN2O94905 339 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 TDP2O95551 362 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 DSC1Q08554 894 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 LAMTOR4Q0VGL1 99 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 HTR4Q13639 388 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 NTRK3Q16288 839 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 USP41Q3LFD5 358 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 GET4Q7L5D6 327 aaPredicted RBP15.46■□□□□ 0.07
VPS29-201ENST00000360579 TRIM22Q8IYM9 498 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 HACE1Q8IYU2 909 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 SMG8Q8ND04 991 aaKnown RBP15.46■□□□□ 0.07
VPS29-201ENST00000360579 PJA1Q8NG27 643 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 MBOAT7Q96N66 472 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 PRKD2Q9BZL6 878 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 MINDY3Q9H8M7 445 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 CHST7Q9NS84 486 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 DLL3Q9NYJ7 618 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 FNIP2Q9P278 1114 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 IPPQ9Y573 584 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 OTOGLQ3ZCN5 2332 aa15.46■□□□□ 0.07
VPS29-201ENST00000360579 TGM5O43548 720 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 KINO60870 393 aaKnown RBP15.45■□□□□ 0.06
VPS29-201ENST00000360579 P4HBP07237 508 aaKnown RBP15.45■□□□□ 0.06
VPS29-201ENST00000360579 SDHBP21912 280 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 MLH1P40692 756 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 NPEPPSP55786 919 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 STARD6P59095 220 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 PPP2R5CQ13362 524 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 ZNF528Q3MIS6 628 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 NOTUMQ6P988 496 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 BLOC1S2Q6QNY1 142 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 PALB2Q86YC2 1186 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 FAM177A1Q8N128 213 aaPredicted RBP15.45■□□□□ 0.06
VPS29-201ENST00000360579 RNF149Q8NC42 400 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 TMEM143Q96AN5 459 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 YTHDC1Q96MU7 727 aaKnown RBP15.45■□□□□ 0.06
VPS29-201ENST00000360579 GAD1Q99259 594 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 DDX25Q9UHL0 483 aaKnown RBP15.45■□□□□ 0.06
VPS29-201ENST00000360579 NUMBLQ9Y6R0 609 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms