RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HIRAP54198 1017 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 NOP9Q86U38 636 aaKnown RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 VSIG10LQ86VR7 867 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 SLC9A9Q8IVB4 645 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM143Q96AN5 459 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 KREMEN1Q96MU8 473 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 NEUROG2Q9H2A3 272 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 GGA3Q9NZ52 723 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 CALCOCO1Q9P1Z2 691 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 MMEP08473 750 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM253P0C7T8 217 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 CCDC172P0C7W6 258 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 CNTN2Q02246 1040 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 GLE1Q53GS7 698 aaKnown RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 TTMPQ5BVD1 217 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 DCAF12L1Q5VU92 463 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 NIPA1Q7RTP0 329 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 PHIPQ8WWQ0 1821 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 TATDN2Q93075 761 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 A1CFQ9NQ94 594 aaKnown RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 RSPH14Q9UHP6 348 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 BTNL10A8MVZ5 291 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 FLT3P36888 993 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 DCAF15Q66K64 600 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 SYCE1Q8N0S2 351 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 MSL3Q8N5Y2 521 aaKnown RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF526Q8TF50 670 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 ALG3Q92685 438 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 KRT35Q92764 455 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 PFASO15067 1338 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 TGFB2P61812 414 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 PRKCEQ02156 737 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 PDE4CQ08493 712 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 SEZ6Q53EL9 994 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 SLC39A4Q6P5W5 647 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 NSUN6Q8TEA1 469 aaKnown RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 SUCLA2Q9P2R7 463 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF214Q9UL59 606 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-201ENST00000341247 STXBP5LQ9Y2K9 1186 aa11.17□□□□□ -0.62
LIMA1-201ENST00000341247 LCTP09848 1927 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ACOT2P49753 483 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SCFD2Q8WU76 684 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 GLG1Q92896 1179 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 RNPC3Q96LT9 517 aaKnown RBP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SYT11Q9BT88 431 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ERVK-5Q9HDB9 667 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 JPH1Q9HDC5 661 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ALG6Q9Y672 507 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 WDR81Q562E7 1941 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ANKRD62A6NC57 917 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SFNP31947 248 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ACTR2P61160 394 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SP2Q02086 613 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 LRRC31Q6UY01 552 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ACTRT1Q8TDG2 376 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SLC16A10Q8TF71 515 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 HES6Q96HZ4 224 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 POLR3FQ9H1D9 316 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 KIAA1217Q5T5P2 1943 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF233A6NK53 670 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 KCNA2P16389 499 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 DSG3P32926 999 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 NCKAP1LP55160 1127 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 KIF22Q14807 665 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 CEP85LQ5SZL2 805 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 LLGL2Q6P1M3 1020 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 OTUD6AQ7L8S5 288 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SLFN11Q7Z7L1 901 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 PARD3BQ8TEW8 1205 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 UBLCP1Q8WVY7 318 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF668Q96K58 619 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 VPS33BQ9H267 617 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 AS3MTQ9HBK9 375 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 PSD3Q9NYI0 1048 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 BCCIPQ9P287 314 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMA1-201ENST00000341247 SLC9A2Q9UBY0 812 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM59LQ9UK28 342 aa11.16□□□□□ -0.62
LIMA1-201ENST00000341247 LAMA3Q16787 3333 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 HPDP32754 393 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-201ENST00000341247 NNTQ13423 1086 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 EPS8L1Q8TE68 723 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 ZBTB45Q96K62 511 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-201ENST00000341247 TAF1DQ9H5J8 278 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-201ENST00000341247 XPNPEP1Q9NQW7 623 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 CYP39A1Q9NYL5 469 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 ANKFY1Q9P2R3 1169 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 EXOC7Q9UPT5 735 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 PLAAQ9Y263 795 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 A0A0A6YYK5 440 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-201ENST00000341247 LRRIQ4A6NIV6 560 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 DDX3YO15523 660 aaKnown RBP11.15□□□□□ -0.62
LIMA1-201ENST00000341247 OPA1O60313 960 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 ZEB2O60315 1214 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 LYPLA2O95372 231 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 ALCAMQ13740 583 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 KRT39Q6A163 491 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 SPOPLQ6IQ16 392 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 SV2AQ7L0J3 742 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 ANKRD35Q8N283 1001 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms