RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 FUT8Q9BYC5 575 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 HAPLN2Q9GZV7 340 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 ATP6V0A4Q9HBG4 840 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 SH3BP1Q9Y3L3 701 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 SYNGAP1Q96PV0 1343 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 CEP104O60308 925 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 CNMDO75829 334 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 LIG4P49917 911 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 SPATA4Q8NEY3 305 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 KREMEN1Q96MU8 473 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 TCHPQ9BT92 498 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 GEMIN8Q9NWZ8 242 aaKnown RBP13.63□□□□□ -0.23
LIMK1-201ENST00000336180 KCND2Q9NZV8 630 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 RLFQ13129 1914 aa13.63□□□□□ -0.23
LIMK1-201ENST00000336180 H3BQF6 201 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 EIF3JO75822 258 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 H2AFZP0C0S5 128 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 TNNI1P19237 187 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 NCKAP1LP55160 1127 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 GHRHRQ02643 423 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 BIRC3Q13489 604 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 DAB2IPQ5VWQ8 1189 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 H2AFVQ71UI9 128 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 RPUSD2Q8IZ73 545 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 EDEM3Q9BZQ6 932 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 PRDM16Q9HAZ2 1276 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 RNF19AQ9NV58 838 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 FBXO40Q9UH90 709 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 PTPRJQ12913 1337 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 MAPTP10636 758 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 GLRA2P23416 452 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 TMEM132AQ24JP5 1023 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 DPY19L2Q6NUT2 758 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 METTL13Q8N6R0 699 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 IFT81Q8WYA0 676 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 KRT12Q99456 494 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 ANKEF1Q9NU02 776 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 ERICH4A6NGS2 130 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 OATP04181 439 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 OAS2P29728 719 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 NOL9Q5SY16 702 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 BEND6Q5SZJ8 279 aaPredicted RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 FOXR2Q6PJQ5 311 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 INTS8Q75QN2 995 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 ANKRD13AQ8IZ07 590 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 OLIG1Q8TAK6 271 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 DEPTORQ8TB45 409 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 IFT74Q96LB3 600 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 STK33Q9BYT3 514 aa13.62□□□□□ -0.23
LIMK1-201ENST00000336180 NUCKS1Q9H1E3 243 aaKnown RBP13.62□□□□□ -0.23
LIMK1-201ENST00000336180 NOP56O00567 594 aaKnown RBP13.61□□□□□ -0.23
LIMK1-201ENST00000336180 FARP2O94887 1054 aaPredicted RBP13.61□□□□□ -0.23
LIMK1-201ENST00000336180 LYPLA2O95372 231 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 MMEP08473 750 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 TNFSF9P41273 254 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 SV2AQ7L0J3 742 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 PASD1Q8IV76 773 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 IQCDQ96DY2 449 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 NLRP4Q96MN2 994 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 PCDHB18PQ96TA0 734 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 GINM1Q9NU53 330 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 PJA2O43164 708 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 STAT5BP51692 787 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 OAZ1P54368 228 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 NOP9Q86U38 636 aaKnown RBP13.61□□□□□ -0.23
LIMK1-201ENST00000336180 ERO1BQ86YB8 467 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 SLC35G2Q8TBE7 412 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 PARD3BQ8TEW8 1205 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 ZNF516Q92618 1163 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 SYN2Q92777 582 aaPredicted RBP13.61□□□□□ -0.23
LIMK1-201ENST00000336180 CCDC102AQ96A19 550 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 GINS2Q9Y248 185 aa13.61□□□□□ -0.23
LIMK1-201ENST00000336180 BUB1BO60566 1050 aaPredicted RBP13.6□□□□□ -0.23
LIMK1-201ENST00000336180 DGAT1O75907 488 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 ITGA4P13612 1032 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 ZNF394Q53GI3 561 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 XKR3Q5GH77 459 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MAP4K3Q8IVH8 894 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MKNK1Q9BUB5 465 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 COG5Q9UP83 839 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 UMODL1Q5DID0 1318 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 CFHP08603 1231 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 FDX1P10109 184 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 FERP16591 822 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MUTP22033 750 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 CLCN3P51790 818 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 SMC1AQ14683 1233 aaKnown RBP13.6□□□□□ -0.23
LIMK1-201ENST00000336180 SH3D19Q5HYK7 790 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 RIOX2Q8IUF8 465 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 GOLGA5Q8TBA6 731 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 SLC7A3Q8WY07 619 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MMP19Q99542 508 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MAP3K20Q9NYL2 800 aaKnown RBP13.6□□□□□ -0.23
LIMK1-201ENST00000336180 A0A0G2JLL6 359 aaPredicted RBP13.6□□□□□ -0.23
LIMK1-201ENST00000336180 K7ERI5 159 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 FTLP02792 175 aaPredicted RBP13.6□□□□□ -0.23
LIMK1-201ENST00000336180 PAFAH1B1P43034 410 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 MARCKSL1P49006 195 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 KCTD2Q14681 263 aa13.6□□□□□ -0.23
LIMK1-201ENST00000336180 SKIDA1Q1XH10 827 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms