RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RELTQ969Z4 430 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 NEIL1Q96FI4 390 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-201ENST00000326004 LMF1Q96S06 567 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 PCGF6Q9BYE7 350 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 BCO1Q9HAY6 547 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 GOLGA2P5Q9HBQ8 144 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 DMRT3Q9NQL9 472 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 TLR9Q9NR96 1032 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 ING3Q9NXR8 418 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 OAZ3Q9UMX2 235 aa4.39□□□□□ -1.71
HMGB1-201ENST00000326004 GOLGA6CA6NDK9 693 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 GOLGA6BA6NDN3 693 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 HTRA2O43464 458 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-201ENST00000326004 RPLP2P05387 115 aaKnown RBP4.38□□□□□ -1.71
HMGB1-201ENST00000326004 POU2F2P09086 479 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 GOLGA6DP0CG33 693 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 HSPA6P17066 643 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 CR2P20023 1033 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 CNR2P34972 360 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 DUSP2Q05923 314 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 NOMO1Q15155 1222 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 CCDC181Q5TID7 509 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 SLFN13Q68D06 897 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 CMTM4Q8IZR5 234 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 MAGEB6Q8N7X4 407 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 SHCBP1Q8NEM2 672 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 OR7D4Q8NG98 312 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.38□□□□□ -1.71
HMGB1-201ENST00000326004 FEZF2Q8TBJ5 459 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 HOXB13Q92826 284 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-201ENST00000326004 CYFIP2Q96F07 1278 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 RPL10LQ96L21 214 aaKnown RBP4.38□□□□□ -1.71
HMGB1-201ENST00000326004 C7orf25Q9BPX7 421 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 XYLT2Q9H1B5 865 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 NELFAQ9H3P2 528 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 ZCCHC4Q9H5U6 513 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 MANSC1Q9H8J5 431 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 PARD6AQ9NPB6 346 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 NMRK2Q9NPI5 230 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 GOLGA6AQ9NYA3 693 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 GPRC5DQ9NZD1 345 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 SERPINB13Q9UIV8 391 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 INTUQ9ULD6 942 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 IPPQ9Y573 584 aa4.38□□□□□ -1.71
HMGB1-201ENST00000326004 OTOL1A6NHN0 477 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 CCDC154A6NI56 674 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 MATN2O00339 956 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 SGTAO43765 313 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 OFD1O75665 1012 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 PDCP20941 246 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 EDNRBP24530 442 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 ADSLP30566 484 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 RPS19P39019 145 aaKnown RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 NPEPPSP55786 919 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 PER3P56645 1201 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 RIN1Q13671 783 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 MLC1Q15049 377 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 MINDY4Q4G0A6 757 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 USP45Q70EL2 814 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 PDZD4Q76G19 769 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 TPH2Q8IWU9 490 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 ZDHHC14Q8IZN3 488 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 PRR18Q8N4B5 295 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 TSR2Q969E8 191 aaKnown RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 CLIP3Q96DZ5 547 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 CCDC136Q96JN2 1154 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 C8orf48Q96LL4 319 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 UHRF1Q96T88 793 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 GPHA2Q96T91 129 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 MEGF9Q9H1U4 602 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 C12orf65Q9H3J6 166 aaKnown RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 IL23AQ9NPF7 189 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 LANCL2Q9NS86 450 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 GEMIN8Q9NWZ8 242 aaKnown RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 TRPS1Q9UHF7 1281 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 RCAN3Q9UKA8 241 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 LIMCH1Q9UPQ0 1083 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 CFAP20Q9Y6A4 193 aaKnown RBP4.37□□□□□ -1.71
HMGB1-201ENST00000326004 DUSP10Q9Y6W6 482 aa4.37□□□□□ -1.71
HMGB1-201ENST00000326004 A0A1W2PRX2 142 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ERC2O15083 957 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 CDC14BO60729 498 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ITGA10O75578 1167 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 PLATP00750 562 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 LPOP22079 712 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 JAG1P78504 1218 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 SEPT2Q15019 361 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ATAT1Q5SQI0 421 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 UBXN11Q5T124 520 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 IFIT1BQ5T764 474 aaKnown RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 LILRA6Q6PI73 481 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 Q6ZVL8 140 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ADGRE4PQ86SQ3 457 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 WDR75Q8IWA0 830 aaKnown RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 PQLC1Q8N2U9 271 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 LILRA3Q8N6C8 439 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 OR5M3Q8NGP4 307 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 OR2I1PQ8NGU4 316 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 DPF2Q92785 391 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 HPS3Q969F9 1004 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms