RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 TMEM161AQ9NX61 479 aa19.64■□□□□ 0.73
SSSCA1-201ENST00000309328 CGNQ9P2M7 1197 aaKnown RBP19.64■□□□□ 0.73
SSSCA1-201ENST00000309328 LRFN2Q9ULH4 789 aa19.64■□□□□ 0.73
SSSCA1-201ENST00000309328 SIP14410 1827 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 ZMYM2Q9UBW7 1377 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 PPP1R2P41236 205 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 LIG4P49917 911 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 PNOCQ13519 176 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 BMT2Q1RMZ1 405 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 C9orf50Q5SZB4 431 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 NT5DC1Q5TFE4 455 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 SLFN12LQ6IEE8 588 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 MYOCDQ8IZQ8 938 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 LINC01599Q8WXQ3 324 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 PCDHB7Q9Y5E2 793 aa19.63■□□□□ 0.73
SSSCA1-201ENST00000309328 RANBP2P49792 3224 aaKnown RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 CLDN3O15551 220 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 B4GALT5O43286 388 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 MGEA5O60502 916 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 CASP1P29466 404 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 MPZL3Q6UWV2 235 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 EPM2AIP1Q7L775 607 aaPredicted RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 RTN4RL1Q86UN2 441 aaPredicted RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 ECHDC2Q86YB7 292 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 SYCP3Q8IZU3 236 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 TRIML1Q8N9V2 468 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 GOLGA5Q8TBA6 731 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 NUP62CLQ9H1M0 184 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 CLSTN2Q9H4D0 955 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 PDZD7Q9H5P4 517 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 TBC1D7Q9P0N9 293 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 CXXC1Q9P0U4 656 aaPredicted RBP19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 PCDHB2Q9Y5E7 798 aa19.62■□□□□ 0.73
SSSCA1-201ENST00000309328 SCN5AQ14524 2016 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 KIAA0391O15091 583 aaKnown RBP19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 GJB5O95377 273 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 PRR29P0C7W0 189 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 MCF2P10911 925 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 PROZP22891 400 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 TCTN1Q2MV58 587 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 LRIT3Q3SXY7 679 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 HS2ST1Q7LGA3 356 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 HERC6Q8IVU3 1022 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 ZNF507Q8TCN5 953 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 SYAP1Q96A49 352 aaPredicted RBP19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 CPB2Q96IY4 423 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 TCHPQ9BT92 498 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 TARS2Q9BW92 718 aaKnown RBP19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 PTPRHQ9HD43 1115 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 PCDHA5Q9Y5H7 936 aa19.61■□□□□ 0.73
SSSCA1-201ENST00000309328 TET1Q8NFU7 2136 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 CARNS1A5YM72 827 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 MYBP10242 640 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 POU5F1Q01860 360 aaKnown RBP19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 MCL1Q07820 350 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 NOLC1Q14978 699 aaKnown RBP eCLIP19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 RAB30Q15771 203 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 ZNF568Q3ZCX4 644 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 ZC2HC1CQ53FD0 456 aaPredicted RBP19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 COBLL1Q53SF7 1204 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 MRPL10Q7Z7H8 261 aaKnown RBP19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 RAD9AQ99638 391 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 ZBED2Q9BTP6 218 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 GBP3Q9H0R5 595 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 SLC39A2Q9NP94 309 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 INSL6Q9Y581 213 aa19.6■□□□□ 0.73
SSSCA1-201ENST00000309328 SMAD3P84022 425 aaKnown RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 STK4Q13043 487 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 STIM1Q13586 685 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 UBXN11Q5T124 520 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 ZNF658Q5TYW1 1059 aaPredicted RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 ZNF598Q86UK7 904 aaKnown RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 ABI1Q8IZP0 508 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 CRIPAKQ8N1N5 446 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 GUF1Q8N442 669 aaKnown RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 KIAA1468Q9P260 1216 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 COLQQ9Y215 455 aaPredicted RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 GIT1Q9Y2X7 761 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 IPPQ9Y573 584 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 STYXL1Q9Y6J8 313 aa19.59■□□□□ 0.73
SSSCA1-201ENST00000309328 NPTXRO95502 500 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 GARTP22102 1010 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 CASP5P51878 434 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 DEFB103AP81534 67 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 KNOP1Q1ED39 458 aaKnown RBP19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 SKOR2Q2VWA4 1001 aaPredicted RBP19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 GLB1LQ6UWU2 654 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 GPT2Q8TD30 523 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 SCFD1Q8WVM8 642 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 YME1L1Q96TA2 773 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 CCDC94Q9BW85 323 aaPredicted RBP19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 MRPL9Q9BYD2 267 aaKnown RBP19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 TOPORSQ9NS56 1045 aaPredicted RBP19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 PCDH10Q9P2E7 1040 aa19.58■□□□□ 0.72
SSSCA1-201ENST00000309328 KANSL3Q9P2N6 904 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms