RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NOA1Q8NC60 698 aaKnown RBP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 THAP11Q96EK4 314 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 RANBP17Q9H2T7 1088 aaKnown RBP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 L2HGDHQ9H9P8 463 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 UBN1Q9NPG3 1134 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 KRT4P19013 534 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ALDH18A1P54886 795 aaKnown RBP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ROR1Q01973 937 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 FLOT2Q14254 428 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 GRM4Q14833 912 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 MAPRE2Q15555 327 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 LONRF1Q17RB8 773 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 PAIP2BQ9ULR5 123 aaKnown RBP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 USP17L5A8MUK1 530 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 SYF2O95926 243 aaKnown RBP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ARSEP51690 589 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ERP27Q96DN0 273 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 FAM20AQ96MK3 541 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF408Q9H9D4 720 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 BARHL2Q9NY43 387 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ARHGAP26Q9UNA1 814 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 LAMC1P11047 1609 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 DAB2IPQ5VWQ8 1189 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 PADI6Q6TGC4 694 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 ADSSL1Q8N142 457 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 AGPAT1Q99943 283 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 NPHS2Q9NP85 383 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 SEL1LQ9UBV2 794 aa18.39■□□□□ 0.54
SYNPO-201ENST00000307662 UBE4BO95155 1302 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 HIF1AQ16665 826 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 TSSK1BQ9BXA7 367 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 ALG13Q9NP73 1137 aaKnown RBP18.39■□□□□ 0.53
SYNPO-201ENST00000307662 DBR1Q9UK59 544 aaKnown RBP18.39■□□□□ 0.53
SYNPO-201ENST00000307662 JAK3P52333 1124 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 SPOUT1Q5T280 376 aaKnown RBP18.39■□□□□ 0.53
SYNPO-201ENST00000307662 CLEC4GQ6UXB4 293 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 LRRC31Q6UY01 552 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 FAM160B2Q86V87 743 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 CDC26Q8NHZ8 85 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 REREQ9P2R6 1566 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 PI4KBQ9UBF8 816 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 GADL1Q6ZQY3 521 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 DCAF4Q8WV16 495 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 NOD2Q9HC29 1040 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 POLD4Q9HCU8 107 aa18.39■□□□□ 0.53
SYNPO-201ENST00000307662 FNDC3AQ9Y2H6 1198 aaKnown RBP18.39■□□□□ 0.53
SYNPO-201ENST00000307662 RAD51CO43502 376 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 CYP2D6P10635 497 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 ITIH2P19823 946 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 MARK3P27448 753 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 PALMDQ9NP74 551 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 IL10P22301 178 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 TBXAS1P24557 533 aaPredicted RBP18.38■□□□□ 0.53
SYNPO-201ENST00000307662 STOX1Q6ZVD7 989 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 ALKQ9UM73 1620 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 TYW5A2RUC4 315 aaKnown RBP18.38■□□□□ 0.53
SYNPO-201ENST00000307662 LRRC8EQ6NSJ5 796 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 PDXDC2PQ6P474 469 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 CD248Q9HCU0 757 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 AGPAT5Q9NUQ2 364 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 FHOD1Q9Y613 1164 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 FAM47DPA6NHR8 397 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 RTN2O75298 545 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 TMED8Q6PL24 325 aaPredicted RBP18.38■□□□□ 0.53
SYNPO-201ENST00000307662 TRIM72Q6ZMU5 477 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 KIF2BQ8N4N8 673 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 ISCUQ9H1K1 167 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 TMEM260Q9NX78 707 aa18.38■□□□□ 0.53
SYNPO-201ENST00000307662 SPHKAPQ2M3C7 1700 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 IGF2BP3O00425 579 aaKnown RBP eCLIP18.37■□□□□ 0.53
SYNPO-201ENST00000307662 NPR1P16066 1061 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 GNA15P30679 374 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 SLC1A1P43005 524 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 HLFQ16534 295 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 FUT8Q9BYC5 575 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 SLC9A2Q9UBY0 812 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 CHD1O14646 1710 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 H2AFXP16104 143 aaPredicted RBP18.37■□□□□ 0.53
SYNPO-201ENST00000307662 CARSP49589 748 aaKnown RBP18.37■□□□□ 0.53
SYNPO-201ENST00000307662 CYB5D1Q6P9G0 228 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 ENOSF1Q7L5Y1 443 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 TTC8Q8TAM2 541 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 ROPN1BQ9BZX4 212 aaPredicted RBP18.37■□□□□ 0.53
SYNPO-201ENST00000307662 ROPN1Q9HAT0 212 aaPredicted RBP18.37■□□□□ 0.53
SYNPO-201ENST00000307662 RHPN2Q8IUC4 686 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 MADDQ8WXG6 1647 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 ATP8B3O60423 1300 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 NMT2O60551 498 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 TYK2P29597 1187 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 SNAP25P60880 206 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 DAB2P98082 770 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 KCTD2Q14681 263 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 KDM7AQ6ZMT4 941 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 DACH2Q96NX9 599 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 PCSK1NQ9UHG2 260 aa18.37■□□□□ 0.53
SYNPO-201ENST00000307662 POTEFA5A3E0 1075 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 PIK3R2O00459 728 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 APOA1P02647 267 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 POTEIP0CG38 1075 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SERPINB10P48595 397 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms