RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 MXI1P50539 228 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 NAP1L1P55209 391 aaKnown RBP7.1□□□□□ -1.27
USP47-201ENST00000305481 ERVK-9P63128 1117 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 ZNF572Q7Z3I7 529 aaPredicted RBP7.1□□□□□ -1.27
USP47-201ENST00000305481 TRIM50Q86XT4 487 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 LRRC57Q8N9N7 239 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 TMC2Q8TDI7 906 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 MORC4Q8TE76 937 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 U2AF1L4Q8WU68 220 aaKnown RBP7.1□□□□□ -1.27
USP47-201ENST00000305481 SEPT1Q8WYJ6 367 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 MS4A4AQ96JQ5 239 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 KREMEN1Q96MU8 473 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 GOLPH3Q9H4A6 298 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 TAS2R14Q9NYV8 317 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 OGFRQ9NZT2 677 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 STYXL1Q9Y6J8 313 aa7.1□□□□□ -1.27
USP47-201ENST00000305481 MCM3APO60318 1980 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 SASH3O75995 380 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TBC1D8O95759 1140 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 GARTP22102 1010 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 RFX1P22670 979 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 SCN4AP35499 1836 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 VSNL1P62760 191 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TUBB4BP68371 445 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 MKRN4PQ13434 485 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 SNAPC2Q13487 334 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 KCTD2Q14681 263 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 CELF3Q5SZQ8 465 aaKnown RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 MEI1Q5TIA1 1274 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TMCO3Q6UWJ1 677 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 CRELD2Q6UXH1 353 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 HOMEZQ8IX15 550 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 FBXO16Q8IX29 292 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 GPD1LQ8N335 351 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 SLC20A1Q8WUM9 679 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ZNF516Q92618 1163 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 COPS5Q92905 334 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 SLC10A4Q96EP9 437 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ZBTB45Q96K62 511 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 FAM213AQ9BRX8 229 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 EFCC1Q9HA90 598 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 PDGFCQ9NRA1 345 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ARGLU1Q9NWB6 273 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 PACSIN2Q9UNF0 486 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 DAAM1Q9Y4D1 1078 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 HYOU1Q9Y4L1 999 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ZNFX1Q9P2E3 1918 aaKnown RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 FAM170AA1A519 330 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 CCDC151A5D8V7 595 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TTLL13PA6NNM8 815 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 MAFO75444 373 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 TCP1P17987 556 aaKnown RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 NAMPTP43490 491 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 GPC3P51654 580 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 GALCP54803 685 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 C2orf54Q08AI8 447 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 MAP1SQ66K74 1059 aaPredicted RBP7.09□□□□□ -1.27
USP47-201ENST00000305481 SV2AQ7L0J3 742 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 HELQQ8TDG4 1101 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TAS1R2Q8TE23 839 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 SLC7A3Q8WY07 619 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 MS4A14Q96JA4 679 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 MROH8Q9H579 483 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 TMEM8AQ9HCN3 771 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ACP6Q9NPH0 428 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 ATP8B3O60423 1300 aa7.09□□□□□ -1.27
USP47-201ENST00000305481 LGR5O75473 907 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 PIGRP01833 764 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 H2AFZP0C0S5 128 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 ZBTB48P10074 688 aaPredicted RBP7.09□□□□□ -1.28
USP47-201ENST00000305481 RFC5P40937 340 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 NLRP11P59045 1033 aaKnown RBP7.09□□□□□ -1.28
USP47-201ENST00000305481 CLDN10P78369 228 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 CKAP4Q07065 602 aaKnown RBP7.09□□□□□ -1.28
USP47-201ENST00000305481 CETN1Q12798 172 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 PRPF4BQ13523 1007 aaKnown RBP7.09□□□□□ -1.28
USP47-201ENST00000305481 CAPSQ13938 189 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 BRD3Q15059 726 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 ZBTB41Q5SVQ8 909 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 KRT39Q6A163 491 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 H2AFVQ71UI9 128 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 FAM71AQ8IYT1 594 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 BICD1Q96G01 975 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 FUT8Q9BYC5 575 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 NRBP2Q9NSY0 501 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 SIP14410 1827 aa7.09□□□□□ -1.28
USP47-201ENST00000305481 PTPRJQ12913 1337 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 ZC3H4Q9UPT8 1303 aaKnown RBP7.08□□□□□ -1.28
USP47-201ENST00000305481 LRRIQ4A6NIV6 560 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 TMCO5BA8MYB1 307 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 DLATP10515 647 aaKnown RBP7.08□□□□□ -1.28
USP47-201ENST00000305481 MARK3P27448 753 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 COPB2P35606 906 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 LIG4P49917 911 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 GPR162Q16538 588 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 BEND6Q5SZJ8 279 aaPredicted RBP7.08□□□□□ -1.28
USP47-201ENST00000305481 WDR78Q5VTH9 848 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 FAM160B1Q5W0V3 765 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 C15orf39Q6ZRI6 1047 aa7.08□□□□□ -1.28
USP47-201ENST00000305481 PNMA8AQ86V59 439 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms