RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SCFD2Q8WU76 684 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 CCDC127Q96BQ5 260 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 THAP2Q9H0W7 228 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 EPB41L5Q9HCM4 733 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 XPNPEP1Q9NQW7 623 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 PDLIM7Q9NR12 457 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 ADGRA3Q8IWK6 1321 aa25.91■■□□□ 1.74
TRIM54-201ENST00000296098 PPATQ06203 517 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 SH3D19Q5HYK7 790 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 RASGEF1CQ8N431 466 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 TMC2Q8TDI7 906 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 TMEM8AQ9HCN3 771 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 ZSCAN5CA6NGD5 496 aaPredicted RBP25.9■■□□□ 1.74
TRIM54-201ENST00000296098 RAD51CO43502 376 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 SORBS3O60504 671 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 SUPT20HL2P0C7V6 817 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 PRKG1Q13976 671 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 GPC2Q8N158 579 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 POMGNT1Q8WZA1 660 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 KAT5Q92993 513 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 FBXL18Q96ME1 805 aa25.9■■□□□ 1.74
TRIM54-201ENST00000296098 AGPSO00116 658 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 USP8P40818 1118 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 LMAN1P49257 510 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 HIRAP54198 1017 aaPredicted RBP25.89■■□□□ 1.74
TRIM54-201ENST00000296098 USP37Q86T82 979 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 RPUSD2Q8IZ73 545 aaKnown RBP25.89■■□□□ 1.74
TRIM54-201ENST00000296098 PPM1KQ8N3J5 372 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 IFT74Q96LB3 600 aa25.89■■□□□ 1.74
TRIM54-201ENST00000296098 POLR3FQ9H1D9 316 aaPredicted RBP25.89■■□□□ 1.74
TRIM54-201ENST00000296098 A0A0G2JMZ2 1700 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 ESYT3A0FGR9 886 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 HNRNPDLO14979 420 aaKnown RBP25.88■■□□□ 1.73
TRIM54-201ENST00000296098 CARSP49589 748 aaKnown RBP25.88■■□□□ 1.73
TRIM54-201ENST00000296098 MFAP3P55082 362 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 XKR3Q5GH77 459 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 RHOT2Q8IXI1 618 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 FAM71AQ8IYT1 594 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 CHST13Q8NET6 341 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 NLGN2Q8NFZ4 835 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 SEMA4DQ92854 862 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 MFSD14AQ96MC6 490 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 KREMEN1Q96MU8 473 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 FAM204AQ9H8W3 233 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 COQ4Q9Y3A0 265 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 PTPRFP10586 1907 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 H0YCG3 227 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 TULP1O00294 542 aaPredicted RBP25.88■■□□□ 1.73
TRIM54-201ENST00000296098 CYP24A1Q07973 514 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 STXBP2Q15833 593 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 DNERQ8NFT8 737 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 ISCUQ9H1K1 167 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 PLEKHA4Q9H4M7 779 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 NFU1Q9UMS0 254 aa25.88■■□□□ 1.73
TRIM54-201ENST00000296098 DICER1Q9UPY3 1922 aaKnown RBP25.88■■□□□ 1.73
TRIM54-201ENST00000296098 MYH9P35579 1960 aaKnown RBP25.88■■□□□ 1.73
TRIM54-201ENST00000296098 CCDC188H7C350 402 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 GTF2H1P32780 548 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 ABCD1P33897 745 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 GPC3P51654 580 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 BRDTQ58F21 947 aaPredicted RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 GPD1LQ8N335 351 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 EPS8L1Q8TE68 723 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 CASKIN2Q8WXE0 1202 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 IFT81Q8WYA0 676 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 RIN2Q8WYP3 895 aaPredicted RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 SHC3Q92529 594 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 BICD1Q96G01 975 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 UTP3Q9NQZ2 479 aaKnown RBP eCLIP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 TOPORSQ9NS56 1045 aaPredicted RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 NOCTQ9UK39 431 aaKnown RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 GARTP22102 1010 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 HADHBP55084 474 aaKnown RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 MTERF2Q49AM1 385 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 GOLGA6L1Q8N7Z2 621 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 FBXL13Q8NEE6 735 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 POP1Q99575 1024 aaKnown RBP25.87■■□□□ 1.73
TRIM54-201ENST00000296098 AP1M1Q9BXS5 423 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 ARHGAP28Q9P2N2 729 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 COG5Q9UP83 839 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 SNCAIPQ9Y6H5 919 aa25.87■■□□□ 1.73
TRIM54-201ENST00000296098 FAM170AA1A519 330 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 KRIT1O00522 736 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 USP2O75604 605 aaPredicted RBP25.86■■□□□ 1.73
TRIM54-201ENST00000296098 SGPL1O95470 568 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 FTLP02792 175 aaPredicted RBP25.86■■□□□ 1.73
TRIM54-201ENST00000296098 ICAM3P32942 547 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 ENPEPQ07075 957 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 EMC2Q15006 297 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 NOP9Q86U38 636 aaKnown RBP25.86■■□□□ 1.73
TRIM54-201ENST00000296098 TSEN2Q8NCE0 465 aaKnown RBP25.86■■□□□ 1.73
TRIM54-201ENST00000296098 NT5C1BQ96P26 610 aa25.86■■□□□ 1.73
TRIM54-201ENST00000296098 DIS3Q9Y2L1 958 aaKnown RBP25.86■■□□□ 1.73
TRIM54-201ENST00000296098 CCDC66A2RUB6 948 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 DDX3YO15523 660 aaKnown RBP25.85■■□□□ 1.73
TRIM54-201ENST00000296098 SP2Q02086 613 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 VGLL4Q14135 290 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 TAS1R3Q7RTX0 852 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 ANKRD35Q8N283 1001 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 AFAP1L1Q8TED9 768 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms