RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 SLC10A4Q96EP9 437 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 C7orf25Q9BPX7 421 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CACNA1SQ13698 1873 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 FAM187AA6NFU0 413 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 MIF4GDA9UHW6 222 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 PRELPP51888 382 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 BACE1P56817 501 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 NAB2Q15742 525 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 BRDTQ58F21 947 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 TRPM8Q7Z2W7 1104 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 DDX23Q9BUQ8 820 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 ACAD9Q9H845 621 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 BAZ2AQ9UIF9 1905 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 NFKBIEO00221 500 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 GLI1P08151 1106 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 BRAFP15056 766 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 CA4P22748 312 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 PHBP35232 272 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SREBF1P36956 1147 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TRIP13Q15645 432 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ODR4Q5SWX8 454 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 C9orf131Q5VYM1 1079 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SRRM1Q8IYB3 904 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ATP6V0A1Q93050 837 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 PRMT1Q99873 361 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TEX13BQ9BXU2 312 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TXNDC16Q9P2K2 825 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ARHGAP42A6NI28 874 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 E9PMD0 336 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 H0YCG3 227 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 NDC80O14777 642 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ATP5HO75947 161 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 FIGNQ5HY92 759 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 NBPF12Q5TAG4 269 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SNRNP48Q6IEG0 339 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TTI2Q6NXR4 508 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SH3BP5LQ7L8J4 393 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 PALM2Q8IXS6 379 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 C3orf20Q8ND61 904 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 NSMCE1Q8WV22 266 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 RMDN3Q96TC7 470 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SH3GL3Q99963 347 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 VCX3AQ9NNX9 186 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SLC5A4Q9NY91 659 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 EXOC1LA0A1B0GW35 172 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 LRRC10BA6NIK2 292 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ENO4A6NNW6 628 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ATF7P17544 494 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 JAK3P52333 1124 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 HMGCS2P54868 508 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 CDK17Q00537 523 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 KCTD2Q14681 263 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 SDCCAG8Q86SQ7 713 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 NCAPG2Q86XI2 1143 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 ANKRD13AQ8IZ07 590 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 CCDC89Q8N998 374 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 NKX2-3Q8TAU0 364 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TSNARE1Q96NA8 513 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 TRIM51Q9BSJ1 452 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 BHMT2Q9H2M3 363 aa12.34□□□□□ -0.43
CLSTN3-201ENST00000266546 FZD9O00144 591 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 DCTN3O75935 186 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 STAT3P40763 770 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 SCTRP47872 440 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 SKOR1P84550 965 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 SWT1Q5T5J6 900 aaKnown RBP12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 LGSNQ5TDP6 509 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 CTAGE3PQ8IX95 158 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 CNPY4Q8N129 248 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 GTF3C2Q8WUA4 911 aaPredicted RBP12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 CALR3Q96L12 384 aaKnown RBP12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 FHDC1Q9C0D6 1143 aaPredicted RBP12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 TUFT1Q9NNX1 390 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 FAM53CQ9NYF3 392 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 PPP1R9AQ9ULJ8 1098 aa12.33□□□□□ -0.43
CLSTN3-201ENST00000266546 AGTP01019 485 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 ABCD1P33897 745 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 KRT76Q01546 638 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 PDXDC2PQ6P474 469 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 RAB3IL1Q8TBN0 382 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 MDM1Q8TC05 714 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 CCDC127Q96BQ5 260 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 FERMT1Q9BQL6 677 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 WDR18Q9BV38 432 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 ARHGAP20Q9P2F6 1191 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 DNAJC12Q9UKB3 198 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 A0A087X0B3 334 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 POTEB3A0JP26 581 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 POTECB2RU33 542 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 TCP11X1B4DZS4 312 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 PDE2AO00408 941 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 FSBPO95073 299 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 ABL1P00519 1130 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 SFNP31947 248 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 CHRNA3P32297 505 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 NOVP48745 357 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 EPHA7Q15375 998 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 POTEBQ6S5H4 581 aa12.33□□□□□ -0.44
CLSTN3-201ENST00000266546 RAPGEF5Q92565 580 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms