RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 VPS11Q9H270 941 aa18.51■□□□□ 0.55
NOTCH3-201ENST00000263388 CCDC195A0A1B0GUA6 201 aa18.51■□□□□ 0.55
NOTCH3-201ENST00000263388 MXD4Q14582 209 aaPredicted RBP18.51■□□□□ 0.55
NOTCH3-201ENST00000263388 THOC1Q96FV9 657 aaKnown RBP18.51■□□□□ 0.55
NOTCH3-201ENST00000263388 ZBTB1Q9Y2K1 713 aa18.51■□□□□ 0.55
NOTCH3-201ENST00000263388 CLTCQ00610 1675 aaKnown RBP18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 FTLP02792 175 aaPredicted RBP18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 KIAA1210Q9ULL0 1709 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 GCLMP48507 274 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 FRMD5Q7Z6J6 570 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 MRPL4Q9BYD3 311 aaKnown RBP18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 KRT87PA6NCN2 255 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 CLEC4GQ6UXB4 293 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 FAM196AQ6ZSG2 479 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 TRIM54Q9BYV2 358 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 BARHL2Q9NY43 387 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 PI4K2BG5E9Z4 385 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 H0Y626 953 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 TRIM16O95361 564 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 ESRRBO95718 433 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 TRADDQ15628 312 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 ETNK1Q9HBU6 452 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 ITM2BQ9Y287 266 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 POTEMA6NI47 508 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 HNRNPCP07910 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 SDC4P31431 198 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 PADI6Q6TGC4 694 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 SH3GL3Q99963 347 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 CCDC78A2IDD5 438 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 LARGE1O95461 756 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 ARFIP2P53365 341 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 ARPP19P56211 112 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 KRT27Q7Z3Y8 459 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 STAMBPL1Q96FJ0 436 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 FAM161BQ96MY7 647 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 MYO3BQ8WXR4 1341 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 KRT76Q01546 638 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 CATSPER4Q7RTX7 472 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 HEMGNQ9BXL5 484 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 INPP5FQ9Y2H2 1132 aa18.5■□□□□ 0.55
NOTCH3-201ENST00000263388 DRAP1Q14919 205 aaPredicted RBP18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 STXBP2Q15833 593 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 MTA3Q9BTC8 594 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 RASSF10A6NK89 507 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 SERPINB4P48594 390 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 TRPC1P48995 793 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 DDX42Q86XP3 938 aaKnown RBP eCLIP18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 RMDN2Q96LZ7 410 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 POU5F1BQ06416 359 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 GRAPQ13588 217 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 EEPD1Q7L9B9 569 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 GRAPLQ8TC17 118 aaPredicted RBP18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 UBN2Q6ZU65 1347 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 MYO1DO94832 1006 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 MORC2Q9Y6X9 1032 aaPredicted RBP18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 TRIM49BA6NDI0 452 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 PPM1NQ8N819 430 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 RFFLQ8WZ73 363 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 KLC4Q9NSK0 619 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 LRRC7Q96NW7 1537 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 PSMD7P51665 324 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 PTK2BQ14289 1009 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 KIRREL3Q8IZU9 778 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 URGCPQ8TCY9 931 aa18.49■□□□□ 0.55
NOTCH3-201ENST00000263388 GSNP06396 782 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 COG1Q8WTW3 980 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PDCD6IPQ8WUM4 868 aaKnown RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 CCDC90BQ9GZT6 254 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 EPN3Q9H201 632 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 ZNF229Q9UJW7 825 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 UTYO14607 1347 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PSMC1P62191 440 aaKnown RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PRAMEP78395 509 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 CCDC85BQ15834 202 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 TTLL11Q8NHH1 800 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 HOXC10Q9NYD6 342 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 RBBP7Q16576 425 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 ZBED8Q8IZ13 594 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 RTKN2Q8IZC4 609 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 SH3RF3Q8TEJ3 882 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PRR23D1E9PI22 279 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 APOL1O14791 398 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 MAFGO15525 162 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PRR23D2P0DMB1 279 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 SLC1A1P43005 524 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 SETBP1Q9Y6X0 1596 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 SP110Q9HB58 689 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 FBXO40Q9UH90 709 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 ZNF263O14978 683 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PMS1P54277 932 aaKnown RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 EFHC2Q5JST6 749 aa18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 GPBP1L1Q9HC44 474 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 PAIP2BQ9ULR5 123 aaKnown RBP18.48■□□□□ 0.55
NOTCH3-201ENST00000263388 NEDD4P46934 1319 aa18.47■□□□□ 0.55
NOTCH3-201ENST00000263388 KRT16P08779 473 aa18.47■□□□□ 0.55
NOTCH3-201ENST00000263388 PDIA2Q13087 525 aaKnown RBP18.47■□□□□ 0.55
NOTCH3-201ENST00000263388 HIC1Q14526 733 aa18.47■□□□□ 0.55
NOTCH3-201ENST00000263388 TWF2Q6IBS0 349 aaKnown RBP18.47■□□□□ 0.55
NOTCH3-201ENST00000263388 SFR1Q86XK3 245 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms