RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 LMO3Q8TAP4 145 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 PARD3BQ8TEW8 1205 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 TSGA10Q9BZW7 698 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 L2HGDHQ9H9P8 463 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 AJAP1Q9UKB5 411 aaPredicted RBP16.17■□□□□ 0.18
CCDC47-201ENST00000225726 COL1A2P08123 1366 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 RBAK-RBAKDNI3L0D1 243 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 HOXC6P09630 235 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 C2orf40Q9H1Z8 148 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 RNPEPQ9H4A4 650 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 APEX2Q9UBZ4 518 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 USP20Q9Y2K6 914 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 KRT86O43790 486 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 PPFIA4O75335 1185 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 HOXD8P13378 290 aaPredicted RBP16.17■□□□□ 0.18
CCDC47-201ENST00000225726 GTF2H1P32780 548 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 GCLMP48507 274 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 MXI1P50539 228 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 GJB7Q6PEY0 223 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 IRF2BP2Q7Z5L9 587 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 GPIHBP1Q8IV16 184 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 LRRC71Q8N4P6 559 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 OR6J1Q8NGC5 347 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 STK33Q9BYT3 514 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 IRX2Q9BZI1 471 aaPredicted RBP16.17■□□□□ 0.18
CCDC47-201ENST00000225726 CCDC113Q9H0I3 377 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 SUCLA2Q9P2R7 463 aaPredicted RBP16.17■□□□□ 0.18
CCDC47-201ENST00000225726 PCDHA13Q9Y5I0 950 aa16.17■□□□□ 0.18
CCDC47-201ENST00000225726 LRRIQ3A6PVS8 624 aaPredicted RBP16.16■□□□□ 0.18
CCDC47-201ENST00000225726 CYP27A1Q02318 531 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 ZNF569Q5MCW4 686 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 CCDC122Q5T0U0 273 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 FMNL3Q8IVF7 1028 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 ZBTB8OSQ8IWT0 167 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 TXLNBQ8N3L3 684 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 TRAPPC12Q8WVT3 735 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 USP6NLQ92738 828 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 DNAJC12Q9UKB3 198 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 ZNF215Q9UL58 517 aaPredicted RBP16.16■□□□□ 0.18
CCDC47-201ENST00000225726 ZNF233A6NK53 670 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 C22orf31O95567 290 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 ABL1P00519 1130 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 PRKCIP41743 596 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 STAT1P42224 750 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 TFDP1Q14186 410 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 FAM213AQ9BRX8 229 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 IFIH1Q9BYX4 1025 aaKnown RBP16.16■□□□□ 0.18
CCDC47-201ENST00000225726 TMEM117Q9H0C3 514 aa16.16■□□□□ 0.18
CCDC47-201ENST00000225726 AGO2Q9UKV8 859 aaKnown RBP16.16■□□□□ 0.18
CCDC47-201ENST00000225726 VTI1AQ96AJ9 217 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 C16orf70Q9BSU1 422 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 TMEM8AQ9HCN3 771 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 GUCA1BQ9UMX6 200 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ZSWIM8A7E2V4 1837 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ASAP2O43150 1006 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 LDHAP00338 332 aaKnown RBP16.15■□□□□ 0.18
CCDC47-201ENST00000225726 MMP3P08254 477 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 FERP16591 822 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ANXA13P27216 316 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ARID5AQ03989 594 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 EFCAB12Q6NXP0 572 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ZPBP2Q6X784 338 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 TARS2Q9BW92 718 aaKnown RBP16.15■□□□□ 0.18
CCDC47-201ENST00000225726 TRIM10Q9UDY6 481 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 ZNF286BP0CG31 522 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 INSRRP14616 1297 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 TNFAIP2Q03169 654 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 KRT39Q6A163 491 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 RNF149Q8NC42 400 aa16.15■□□□□ 0.18
CCDC47-201ENST00000225726 MRPL4Q9BYD3 311 aaKnown RBP16.15■□□□□ 0.18
CCDC47-201ENST00000225726 RCCD1A6NED2 376 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SPDYE4A6NLX3 237 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 MAGEB2O15479 319 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 EDN1P05305 212 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SOX5P35711 763 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 GFPT1Q06210 699 aaPredicted RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 KIF5AQ12840 1032 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SLC35F6Q8N357 371 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 CCDC127Q96BQ5 260 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 A0A0B4J269 797 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 F8VZ95 297 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 DYNC1I1O14576 645 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 URI1O94763 535 aaPredicted RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SRGAP2CP0DJJ0 459 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 RGS2P41220 211 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 PSMD6Q15008 389 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 OLFML2BQ68BL8 750 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 RHPN2Q8IUC4 686 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SOCS4Q8WXH5 440 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 HHIPL1Q96JK4 782 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 HAPLN2Q9GZV7 340 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 LACRTQ9GZZ8 138 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 LUC7LQ9NQ29 371 aaKnown RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 ABT1Q9ULW3 272 aaKnown RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 COQ4Q9Y3A0 265 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 CTIFO43310 598 aaKnown RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 MAGEA1P43355 309 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 DRAP1Q14919 205 aaPredicted RBP16.14■□□□□ 0.17
CCDC47-201ENST00000225726 SLC18A3Q16572 532 aa16.14■□□□□ 0.17
CCDC47-201ENST00000225726 DGKDQ16760 1214 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms