RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 BTBD7Q9P203 1132 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 HAO1Q9UJM8 370 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 INPP5FQ9Y2H2 1132 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 FAM47DPA6NHR8 397 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 WDR47O94967 919 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 BMP3P12645 472 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 VCPP55072 806 aaKnown RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 FOXD4Q12950 439 aaPredicted RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 R3HDM1Q15032 1099 aaKnown RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 PARVBQ9HBI1 364 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 ANGPTL3Q9Y5C1 460 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 HEG1Q9ULI3 1381 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 M0R3G1 203 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 HSD17B3P37058 310 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 GPC5P78333 572 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 SHC4Q6S5L8 630 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 PRPF18Q99633 342 aaKnown RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 VPS11Q9H270 941 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 PCIF1Q9H4Z3 704 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 DCLRE1BQ9H816 532 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 GOLGA8RI6L899 631 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SASH3O75995 380 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 DLGAP3O95886 979 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SRGAP2BP0DMP2 458 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 AARSP49588 968 aaKnown RBP eCLIP11.06□□□□□ -0.646e-7■■■■■ 85.6
VCL-201ENST00000211998 NR1I3Q14994 352 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 PROSER3Q2NL68 480 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 FAM160B2Q86V87 743 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SFR1Q86XK3 245 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 CCNYQ8ND76 341 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ZC3H15Q8WU90 426 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 CYGBQ8WWM9 190 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 KCNK16Q96T55 309 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SUN2Q9UH99 717 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ANAPC7Q9UJX3 599 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 DNAJC12Q9UKB3 198 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 CAB39Q9Y376 341 aaPredicted RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 ZRANB2O95218 330 aaKnown RBP eCLIP11.06□□□□□ -0.641e-6■■■■■ 30
VCL-201ENST00000211998 CPA2P48052 419 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 IZUMO3Q5VZ72 239 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 DDX42Q86XP3 938 aaKnown RBP eCLIP11.06□□□□□ -0.641e-10■■□□□ 12.4
VCL-201ENST00000211998 PBXIP1Q96AQ6 731 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ADAM33Q9BZ11 813 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 GTSE1Q9NYZ3 720 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 CDK12Q9NYV4 1490 aaPredicted RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 ATP4AP20648 1035 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ADARP55265 1226 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 FMR1Q06787 632 aaKnown RBP eCLIP11.06□□□□□ -0.645e-8■■■□□ 18.8
VCL-201ENST00000211998 ALCAMQ13740 583 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ERFEQ4G0M1 354 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 KCTD21Q4G0X4 260 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 METTL23Q86XA0 190 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 C1orf54Q8WWF1 131 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 PSPC1Q8WXF1 523 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 MAML3Q96JK9 1138 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 NR1H4Q96RI1 486 aaPredicted RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 ZBED2Q9BTP6 218 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 ISCUQ9H1K1 167 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 KMT5AQ9NQR1 393 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 TYW5A2RUC4 315 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 C16orf96A6NNT2 1141 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 PRPF3O43395 683 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 CDH16O75309 829 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 FSBPO95073 299 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 HLA-DPA1P20036 260 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 IGBP1P78318 339 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 KRT17Q04695 432 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 IFRD2Q12894 506 aaPredicted RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 ARL6IP4Q66PJ3 421 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 NLRP10Q86W26 655 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 METTL16Q86W50 562 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 HORMAD1Q86X24 394 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 C4orf33Q8N1A6 199 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 FAM81AQ8TBF8 368 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SUCLA2Q9P2R7 463 aaPredicted RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 DDX20Q9UHI6 824 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 MTO1Q9Y2Z2 717 aaKnown RBP11.06□□□□□ -0.64
VCL-201ENST00000211998 C2CD2Q9Y426 696 aa11.06□□□□□ -0.64
VCL-201ENST00000211998 SYNJ2BP-COX16A0A087WUM0 186 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 ZNF233A6NK53 670 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 ZBED1O96006 694 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 ABL1P00519 1130 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 GHRP10912 638 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 SERPINB8P50452 374 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 GPS1Q13098 491 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 HABP4Q5JVS0 413 aaKnown RBP11.05□□□□□ -0.64
VCL-201ENST00000211998 SYDE2Q5VT97 1194 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 KRT39Q6A163 491 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 GPR141Q7Z602 305 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 SIX6OS1Q8N1H7 587 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 LRRN4CLQ8ND94 238 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 ZFYVE19Q96K21 471 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 TMEM165Q9HC07 324 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 COX16Q9P0S2 106 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 DTNAQ9Y4J8 743 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 AKAP10O43572 662 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 AHCYL1O43865 530 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 CLPTM1O96005 669 aa11.05□□□□□ -0.64
VCL-201ENST00000211998 ATXN3P54252 364 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms