RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CBF1	YJR060W	LSG1	P53145	640 aa	Known RBP	4.81	□□□□□ -1.64
CBF1	YJR060W	YNL181W	P53878	407 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	NCE101	Q02820	53 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	RRN5	Q02983	363 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	YDR239C	Q03780	787 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	KRE28	Q04431	385 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	DCR2	Q05924	578 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	NDL1	Q06568	189 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	LUC7	Q07508	261 aa	Predicted RBP	4.81	□□□□□ -1.64
CBF1	YJR060W	CYK3	Q07533	885 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	DCI1	Q08558	271 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	MRX4	Q12467	430 aa		4.81	□□□□□ -1.64
CBF1	YJR060W	FBA1	P14540	359 aa	Known RBP	4.8	□□□□□ -1.64
CBF1	YJR060W	KGD1	P20967	1014 aa	Known RBP	4.8	□□□□□ -1.64
CBF1	YJR060W	APE2	P32454	952 aa	Known RBP	4.8	□□□□□ -1.64
CBF1	YJR060W	SEF1	P34228	1148 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	SPC34	P36131	295 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	MIT1	P40002	666 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	ATF1	P40353	525 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	MPM1	P40364	252 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	RMR1	P53060	241 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	COS6	P53344	381 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	OGG1	P53397	376 aa	Predicted RBP	4.8	□□□□□ -1.64
CBF1	YJR060W	CPR8	P53728	308 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	DBP6	P53734	629 aa	Known RBP	4.8	□□□□□ -1.64
CBF1	YJR060W	YDR209C	Q03480	137 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	GIS1	Q03833	894 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	SEI1	Q06058	285 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	YPL272C	Q08984	517 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	VIK1	Q12045	647 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	TMS1	Q12116	473 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	YDL211C	Q12121	372 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	YOR342C	Q12182	319 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	PSY3	Q12318	242 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	NUM1	Q00402	2748 aa		4.8	□□□□□ -1.64
CBF1	YJR060W	IPP1	P00817	287 aa	Known RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	BAR1	P12630	587 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	GRR1	P24814	1151 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	ADH7	P25377	361 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	PUP2	P32379	260 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	PHM8	P40025	321 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	THO1	P40040	218 aa	Known RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	SOK1	P40317	901 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	FMP33	P46998	180 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	DPB11	P47027	764 aa	Predicted RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	EMC2	P47133	292 aa	Known RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	NUP57	P48837	541 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	YGL260W	P53056	76 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	YGL117W	P53133	265 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	MPA43	P53583	542 aa	Predicted RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	RHO5	P53879	331 aa	Known RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	CIK1	Q01649	594 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	YPL107W	Q02873	248 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	PFA5	Q03289	374 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	PAL1	Q05518	499 aa	Known RBP	4.79	□□□□□ -1.64
CBF1	YJR060W	ARV1	Q06541	321 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	MDM32	Q12171	622 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	MTR10	Q99189	972 aa		4.79	□□□□□ -1.64
CBF1	YJR060W	ERD1	P16151	362 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	PTC6	P25646	442 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	TPO5	P36029	618 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	PDX3	P38075	228 aa	Known RBP	4.78	□□□□□ -1.64
CBF1	YJR060W	ANS1	P38832	159 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	NSG1	P38837	291 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YFL015C	P43578	164 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	FAR7	P43592	221 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YGR016W	P53209	190 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YGR168C	P53293	376 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	MTQ1	P53944	314 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	SPR6	Q01684	191 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YPL068C	Q02749	293 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	SKI8	Q02793	397 aa	Predicted RBP	4.78	□□□□□ -1.64
CBF1	YJR060W	CGI121	Q03705	181 aa	Known RBP	4.78	□□□□□ -1.64
CBF1	YJR060W	BUR2	Q05949	395 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YLR345W	Q06137	509 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	HNT3	Q08702	217 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	INP53	Q12271	1107 aa		4.78	□□□□□ -1.64
CBF1	YJR060W	YOL163W	P0CF20	169 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	PDA1	P16387	420 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	PET9	P18239	318 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	RAD51	P25454	400 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	NTG1	P31378	399 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	GDH2	P33327	1092 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	CMC1	P36064	111 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	FLO10	P36170	1169 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	OM14	P38325	134 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
CBF1	YJR060W	ECM34	P38728	170 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	UIP3	P39547	235 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	PAC2	P39937	518 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	AST2	P39945	430 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	GCN20	P43535	752 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	AGP3	P43548	558 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	ECO1	P43605	281 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	IMD4	P50094	524 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	MRK1	P50873	501 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	MPC1	P53157	130 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	CTL1	Q03220	320 aa	Known RBP	4.77	□□□□□ -1.65
CBF1	YJR060W	YDR249C	Q03787	373 aa		4.77	□□□□□ -1.65
CBF1	YJR060W	SEC13	Q04491	297 aa	Known RBP	4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms