RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	CKS1	P20486	150 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	GRR1	P24814	1151 aa		4.79	□□□□□ -1.64
UBP9	YER098W	ZTA1	P38230	334 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	ATG27	P46989	271 aa		4.79	□□□□□ -1.64
UBP9	YER098W	RRN9	P53437	365 aa		4.79	□□□□□ -1.64
UBP9	YER098W	AQR1	P53943	586 aa		4.79	□□□□□ -1.64
UBP9	YER098W	OCA2	P53949	197 aa		4.79	□□□□□ -1.64
UBP9	YER098W	SLM2	P53955	656 aa		4.79	□□□□□ -1.64
UBP9	YER098W	YPL113C	Q02961	396 aa		4.79	□□□□□ -1.64
UBP9	YER098W	SWC7	Q06707	132 aa		4.79	□□□□□ -1.64
UBP9	YER098W	YPD1	Q07688	167 aa		4.79	□□□□□ -1.64
UBP9	YER098W	SLD7	Q08457	257 aa		4.79	□□□□□ -1.64
UBP9	YER098W	PNS1	Q12412	539 aa		4.79	□□□□□ -1.64
UBP9	YER098W	PMD1	P32634	1753 aa		4.79	□□□□□ -1.64
UBP9	YER098W	MAS1	P10507	462 aa		4.79	□□□□□ -1.64
UBP9	YER098W	PHO80	P20052	293 aa		4.79	□□□□□ -1.64
UBP9	YER098W	TKL1	P23254	680 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	DBR1	P24309	405 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	FUN26	P31381	517 aa		4.79	□□□□□ -1.64
UBP9	YER098W	ACB1	P31787	87 aa		4.79	□□□□□ -1.64
UBP9	YER098W	THI80	P35202	319 aa		4.79	□□□□□ -1.64
UBP9	YER098W	MRPL4	P36517	319 aa		4.79	□□□□□ -1.64
UBP9	YER098W	MMS4	P38257	691 aa		4.79	□□□□□ -1.64
UBP9	YER098W	MCM22	P47167	239 aa		4.79	□□□□□ -1.64
UBP9	YER098W	SNN1	P48232	102 aa		4.79	□□□□□ -1.64
UBP9	YER098W	ASN1	P49089	572 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	MRPS16	Q02608	121 aa		4.79	□□□□□ -1.64
UBP9	YER098W	YMD8	Q03697	442 aa		4.79	□□□□□ -1.64
UBP9	YER098W	YDR387C	Q04162	555 aa		4.79	□□□□□ -1.64
UBP9	YER098W	RNH1	Q04740	348 aa		4.79	□□□□□ -1.64
UBP9	YER098W	PAL1	Q05518	499 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	YHC1	Q05900	231 aa	Known RBP	4.79	□□□□□ -1.64
UBP9	YER098W	YLR108C	Q12259	485 aa		4.79	□□□□□ -1.64
UBP9	YER098W	YKL018C-A	Q3E7A7	99 aa		4.79	□□□□□ -1.64
UBP9	YER098W	RPL7A	P05737	244 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	MET2	P08465	486 aa		4.78	□□□□□ -1.64
UBP9	YER098W	PET54	P10834	293 aa		4.78	□□□□□ -1.64
UBP9	YER098W	DAL81	P21657	970 aa		4.78	□□□□□ -1.64
UBP9	YER098W	SAT4	P25333	603 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	YCR101C	P25607	182 aa		4.78	□□□□□ -1.64
UBP9	YER098W	YCR102C	P25608	368 aa		4.78	□□□□□ -1.64
UBP9	YER098W	TAH1	P25638	111 aa	Predicted RBP	4.78	□□□□□ -1.64
UBP9	YER098W	PHO91	P27514	894 aa		4.78	□□□□□ -1.64
UBP9	YER098W	SCM4	P32564	187 aa		4.78	□□□□□ -1.64
UBP9	YER098W	FLO10	P36170	1169 aa		4.78	□□□□□ -1.64
UBP9	YER098W	MBB1	P39534	108 aa		4.78	□□□□□ -1.64
UBP9	YER098W	RMD6	P39975	231 aa		4.78	□□□□□ -1.64
UBP9	YER098W	RGI1	P40043	161 aa	Predicted RBP	4.78	□□□□□ -1.64
UBP9	YER098W	SLM1	P40485	686 aa		4.78	□□□□□ -1.64
UBP9	YER098W	YJL218W	P40892	196 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	PRM8	P53174	237 aa		4.78	□□□□□ -1.64
UBP9	YER098W	YGL039W	P53183	348 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	YMR034C	Q05131	434 aa	Predicted RBP	4.78	□□□□□ -1.64
UBP9	YER098W	HBT1	Q07653	1046 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	RPL7B	Q12213	244 aa	Known RBP	4.78	□□□□□ -1.64
UBP9	YER098W	ZWF1	P11412	505 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	MRPL8	P22353	238 aa		4.77	□□□□□ -1.65
UBP9	YER098W	IFM1	P25038	676 aa		4.77	□□□□□ -1.65
UBP9	YER098W	NDC1	P32500	655 aa		4.77	□□□□□ -1.65
UBP9	YER098W	LHP1	P33399	275 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	SRP102	P36057	244 aa	Predicted RBP	4.77	□□□□□ -1.65
UBP9	YER098W	MBA1	P38300	278 aa		4.77	□□□□□ -1.65
UBP9	YER098W	VHS2	P40463	436 aa		4.77	□□□□□ -1.65
UBP9	YER098W	YNL143C	P53908	130 aa		4.77	□□□□□ -1.65
UBP9	YER098W	SEN15	Q04675	128 aa		4.77	□□□□□ -1.65
UBP9	YER098W	RIF2	Q06208	395 aa		4.77	□□□□□ -1.65
UBP9	YER098W	CUR1	Q06469	252 aa		4.77	□□□□□ -1.65
UBP9	YER098W	WTM1	Q12363	437 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	PAA1	Q12447	191 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	YER145C-A	A0A023PYF4	145 aa		4.77	□□□□□ -1.65
UBP9	YER098W	TCP1	P12612	559 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	MAG1	P22134	296 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	YCR090C	P25654	182 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	DAL80	P26343	269 aa		4.77	□□□□□ -1.65
UBP9	YER098W	RIM1	P32445	135 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	CAT2	P32796	670 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	YMR144W	P40214	342 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	ATG18	P43601	500 aa		4.77	□□□□□ -1.65
UBP9	YER098W	ALK1	P43633	760 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	YJR030C	P47101	745 aa		4.77	□□□□□ -1.65
UBP9	YER098W	MOG1	P47123	218 aa		4.77	□□□□□ -1.65
UBP9	YER098W	TOM22	P49334	152 aa		4.77	□□□□□ -1.65
UBP9	YER098W	MPC1	P53157	130 aa	Known RBP	4.77	□□□□□ -1.65
UBP9	YER098W	YGR126W	P53274	230 aa		4.77	□□□□□ -1.65
UBP9	YER098W	SLG1	P54867	378 aa		4.77	□□□□□ -1.65
UBP9	YER098W	YLR455W	Q06188	304 aa		4.77	□□□□□ -1.65
UBP9	YER098W	YPR091C	Q06833	770 aa		4.77	□□□□□ -1.65
UBP9	YER098W	YLR049C	Q12110	428 aa		4.77	□□□□□ -1.65
UBP9	YER098W	RGT2	Q12300	763 aa		4.77	□□□□□ -1.65
UBP9	YER098W	REV1	P12689	985 aa		4.76	□□□□□ -1.65
UBP9	YER098W	MGR1	P25573	417 aa		4.76	□□□□□ -1.65
UBP9	YER098W	FAA1	P30624	700 aa	Known RBP	4.76	□□□□□ -1.65
UBP9	YER098W	CAF4	P36130	643 aa		4.76	□□□□□ -1.65
UBP9	YER098W	COA1	P40452	197 aa		4.76	□□□□□ -1.65
UBP9	YER098W	CDC1	P40986	491 aa		4.76	□□□□□ -1.65
UBP9	YER098W	LYS20	P48570	428 aa	Known RBP	4.76	□□□□□ -1.65
UBP9	YER098W	MKC7	P53379	596 aa		4.76	□□□□□ -1.65
UBP9	YER098W	HHO1	P53551	258 aa		4.76	□□□□□ -1.65
UBP9	YER098W	IDP3	P53982	420 aa	Known RBP	4.76	□□□□□ -1.65
UBP9	YER098W	YCL001W-A	P87012	153 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms