RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	NUP116	Q02630	1113 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	PEX12	Q04370	399 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	MHR1	Q06630	226 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	SYC1	Q08553	188 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	FRE3	Q08905	711 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	MED11	Q99278	115 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	CDC28	P00546	298 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	MRPL44	P19956	98 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	PPH22	P23595	377 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	PHA2	P32452	334 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	SRB5	P32585	307 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	EMP70	P32802	667 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YHR122W	P38829	231 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	GPI16	P38875	610 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	SEO1	P39709	593 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YEL020C	P39994	560 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YFL040W	P43562	540 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YFL012W	P43580	148 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	MNN5	P46982	586 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	RPA34	P47006	233 aa	Predicted RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	RTT101	P47050	842 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YGR149W	P48236	432 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	PAC10	P48363	199 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YGR017W	P53210	297 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
CDC48	YDL126C	MRPS16	Q02608	121 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	EKI1	Q03764	534 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	CAB5	Q03941	241 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	ATC1	Q04005	294 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YPR147C	Q06522	304 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	DCP1	Q12517	231 aa	Predicted RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	YKL033W-A	Q86ZR7	236 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YLR422W	Q06409	1932 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	STE2	D6VTK4	431 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	AAC1	P04710	309 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	RPL31A	P0C2H8	113 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	RPL31B	P0C2H9	113 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	ECM13	P38195	257 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	FAR3	P46671	204 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	MSY1	P48527	492 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YIP5	P53108	310 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	YGR026W	P53217	278 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	TRM112	P53738	135 aa	Predicted RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	RHO3	Q00245	231 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	OSH6	Q02201	448 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	TDA1	Q03533	586 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	VHS1	Q03785	461 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	DLT1	Q04216	342 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	GTO3	Q04806	366 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	FAR10	Q06001	478 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	LYS21	Q12122	440 aa	Known RBP	4.19	□□□□□ -1.74
CDC48	YDL126C	YDR262W	Q12331	272 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	RGS2	Q99188	309 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	UBR2	Q07963	1872 aa		4.19	□□□□□ -1.74
CDC48	YDL126C	CDC7	P06243	507 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	RPS16A	P0CX51	143 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	RPS16B	P0CX52	143 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	DBR1	P24309	405 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	RNA14	P25298	677 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	RHB1	P25378	209 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	ATG22	P25568	528 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	RAD14	P28519	371 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	RAD23	P32628	398 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	AIM29	P36154	155 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	MAL32	P38158	584 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	PEP8	P40335	379 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YJL118W	P47022	219 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	MAL12	P53341	584 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	ARL3	Q02804	198 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	SCS7	Q03529	384 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	SWC7	Q06707	132 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	LCB4	Q12246	624 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	DGK1	Q12382	290 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	MTR10	Q99189	972 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	RHO1	P06780	209 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
CDC48	YDL126C	FBA1	P14540	359 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	CTR86	P25355	563 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	BEM1	P29366	551 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	APE2	P32454	952 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	OAR1	P35731	278 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	ELF1	P36053	145 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	SCO2	P38072	301 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YBR241C	P38142	488 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YHR210C	P38893	341 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	ECM10	P39987	644 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	GAB1	P41733	394 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	AGP3	P43548	558 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	OCA2	P53949	197 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	PIR3	Q03180	325 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YMR178W	Q03219	274 aa	Known RBP	4.18	□□□□□ -1.74
CDC48	YDL126C	YMR209C	Q03648	457 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YOR029W	Q12243	111 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	YDL007C-A	Q2V2Q0	85 aa		4.18	□□□□□ -1.74
CDC48	YDL126C	CBP6	P07253	162 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	NTH1	P32356	751 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	UGP1	P32861	499 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	RPS1A	P33442	255 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	HIS7	P33734	552 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	PHO89	P38361	574 aa		4.17	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 32.3 ms