RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PGBD1Q96JS3 809 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TUBGCP5Q96RT8 1024 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PLEKHF1Q96S99 279 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MRPL1Q9BYD6 325 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 WDR12Q9GZL7 423 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SLC38A10Q9HBR0 1119 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DDX20Q9UHI6 824 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 EIF4A2Q14240 407 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CDR2LQ86X02 465 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TTLL11Q8NHH1 800 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 NDNQ99608 321 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RPAP3Q9H6T3 665 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ANKZF1Q9H8Y5 726 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 METTL5Q9NRN9 209 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 STRIP2Q9ULQ0 834 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 V9GY48 417 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PLB1Q6P1J6 1458 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SHROOM2Q13796 1616 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 IFNB1P01574 187 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ATP1A1P05023 1023 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 HSPD1P10809 573 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SOX6P35712 828 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CARSP49589 748 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 NAA30Q147X3 362 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GPBP1Q86WP2 473 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 FBXL13Q8NEE6 735 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KCNV2Q8TDN2 545 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 VPS39Q96JC1 886 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TSSK1BQ9BXA7 367 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TRABDQ9H4I3 376 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SLC24A2Q9UI40 661 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 L3MBTL1Q9Y468 752 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KDM6AO15550 1401 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PHF20L1A8MW92 1017 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 POC1B-GALNT4F8VUJ3 575 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CCNT1O60563 726 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 AP1G2O75843 785 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CALB1P05937 261 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 IL13P35225 146 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GJC1P36383 396 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 HDLBPQ00341 1268 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF827Q17R98 1081 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RNF43Q68DV7 783 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ACTRT1Q8TDG2 376 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RAPGEF5Q92565 580 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MPP4Q96JB8 637 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KLHL25Q9H0H3 589 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 VPS45Q9NRW7 570 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 NSMCE4AQ9NXX6 385 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TLR7Q9NYK1 1049 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TAGLN3Q9UI15 199 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TRMT112Q9UI30 125 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MTMR7Q9Y216 660 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TPD52L2O43399 206 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CPA1P15085 419 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MAPK4P31152 587 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MTA1Q13330 715 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 NAB2Q15742 525 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ZBTB18Q99592 522 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PRMT1Q99873 361 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ST7Q9NRC1 585 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DISC1Q9NRI5 854 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SEL1LQ9UBV2 794 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KIAA0556O60303 1618 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SAGE2PA6NJ88 616 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CNTFP26441 200 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SNX30Q5VWJ9 437 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DACT3Q96B18 629 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ZSCAN10Q96SZ4 725 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PNKPQ96T60 521 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 USP44Q9H0E7 712 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 UBA2Q9UBT2 640 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CAPN9O14815 690 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TBC1D4O60343 1298 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GRK2P25098 689 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ADSLP30566 484 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 USP11P51784 963 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PRPSAP1Q14558 356 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 THOC7Q6I9Y2 204 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RWDD4Q6NW29 188 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KRT26Q7Z3Y9 468 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SGMS1Q86VZ5 419 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TPH2Q8IWU9 490 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PCYOX1LQ8NBM8 494 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RMND5BQ96G75 393 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 WHRNQ9P202 907 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TTC26A0AVF1 554 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GSTA4O15217 222 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PTH1RQ03431 593 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DNAJC3Q13217 504 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TMC5Q6UXY8 1006 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GDAP1Q8TB36 358 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GINS4Q9BRT9 223 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MRPL44Q9H9J2 332 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PCDHA4Q9UN74 947 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 EFR3BQ9Y2G0 817 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 AP3M1Q9Y2T2 418 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 A0A0D9SFI3 127 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM120BA0PK00 339 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 CFAP99D6REC4 459 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms