RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LIG4P49917 911 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 CHMP4BP1P59074 171 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 NFRKBQ6P4R8 1299 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 IFNLR1Q8IU57 520 aaPredicted RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 LRRC8AQ8IWT6 810 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 KIAA0319LQ8IZA0 1049 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 CCDC150Q8NCX0 1101 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 SLC35C1Q96A29 364 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 NLRP4Q96MN2 994 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 ZNF830Q96NB3 372 aaPredicted RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 MTG1Q9BT17 334 aaPredicted RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 BEGAINQ9BUH8 593 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 MSCO60682 206 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 EDN1P05305 212 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 CST5P28325 142 aaPredicted RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 MCCD1P59942 119 aaPredicted RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 KCNH2Q12809 1159 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 SYCP1Q15431 976 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 KLHDC9Q8NEP7 349 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 FBXL18Q96ME1 805 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 MAP7D2Q96T17 732 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 IFT122Q9HBG6 1241 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 DDX20Q9UHI6 824 aaKnown RBP20.13■□□□□ 0.81
CLN3-254ENST00000637050 TSKSQ9UJT2 592 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 AKT3Q9Y243 479 aa20.13■□□□□ 0.81
CLN3-254ENST00000637050 TRIM14Q14142 442 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 HIC1Q14526 733 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 MAPK6Q16659 721 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 ZPBP2Q6X784 338 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 ZSWIM2Q8NEG5 633 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 POMGNT1Q8WZA1 660 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 TARS2Q9BW92 718 aaKnown RBP20.12■□□□□ 0.81
CLN3-254ENST00000637050 FZD8Q9H461 694 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 SIK3Q9Y2K2 1263 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 KAT6AQ92794 2004 aa20.12■□□□□ 0.81
CLN3-254ENST00000637050 SMIM35A0A1B0GVV1 85 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 KIAA0391O15091 583 aaKnown RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 AFPP02771 609 aaKnown RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 VTNP04004 478 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 GYPCP04921 128 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 INHAP05111 366 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 PRKCBP05771 671 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 SFPQP23246 707 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-254ENST00000637050 PHKA2P46019 1235 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 RBL2Q08999 1139 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 SLFN12LQ6IEE8 588 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 CCSAPQ6IQ19 270 aaPredicted RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 INTS8Q75QN2 995 aaKnown RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 PPFIBP1Q86W92 1011 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 RDH13Q8NBN7 331 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 PPP1R13LQ8WUF5 828 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 MRPL4Q9BYD3 311 aaKnown RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.11■□□□□ 0.81
CLN3-254ENST00000637050 USP20Q9Y2K6 914 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 ZKSCAN5Q9Y2L8 839 aa20.11■□□□□ 0.81
CLN3-254ENST00000637050 GRK4P32298 578 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 MBTD1Q05BQ5 628 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 LRMPQ12912 555 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 BFSP1Q12934 665 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 DCAF17Q5H9S7 520 aaPredicted RBP20.1■□□□□ 0.81
CLN3-254ENST00000637050 CXCL17Q6UXB2 119 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 CCDC155Q8N6L0 562 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 TC2NQ8N9U0 490 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 ZNF668Q96K58 619 aaPredicted RBP20.1■□□□□ 0.81
CLN3-254ENST00000637050 HDAC6Q9UBN7 1215 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 TRIM17Q9Y577 477 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 PTCH2Q9Y6C5 1203 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 SCN10AQ9Y5Y9 1956 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 A0A087WZ62 844 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 C17orf102A2RUQ5 167 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 ACKR2O00590 384 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 GPC3P51654 580 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 KCNMA1Q12791 1236 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 SNRNP35Q16560 246 aaKnown RBP20.1■□□□□ 0.81
CLN3-254ENST00000637050 FIGNQ5HY92 759 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 TCERG1LQ5VWI1 586 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 ZNF410Q86VK4 478 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 ZSCAN30Q86W11 494 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 GPD1LQ8N335 351 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 C7orf31Q8N865 590 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 SAAL1Q96ER3 474 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 FDXACB1Q9BRP7 624 aaPredicted RBP20.1■□□□□ 0.81
CLN3-254ENST00000637050 NUP58Q9BVL2 599 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 MINDY3Q9H8M7 445 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 WBP1LQ9NX94 342 aa20.1■□□□□ 0.81
CLN3-254ENST00000637050 A0A0B4J269 797 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 GOLGA8IPA6NC78 632 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 GOLGA8JA6NMD2 632 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 TTLL13PA6NNM8 815 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 AKR1B15C9JRZ8 316 aaPredicted RBP20.09■□□□□ 0.81
CLN3-254ENST00000637050 INO80B-WBP1J3KQ70 363 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 ASGR1P07306 291 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 ADRB2P07550 413 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 GNAT1P11488 350 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 CYP2C9P11712 490 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 KRT13P13646 458 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 CASP14P31944 242 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 KLK7P49862 253 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 FXR1P51114 621 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-254ENST00000637050 CDC42EP1Q00587 391 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms