RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 TCP11L1Q9NUJ3 509 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 VPS54Q9P1Q0 977 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 HBS1LQ9Y450 684 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 STK24Q9Y6E0 443 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 COL1A1P02452 1464 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 BTAF1O14981 1849 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 STK36Q9NRP7 1315 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 KCNK3O14649 394 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ECE2O60344 883 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MGEA5O60502 916 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 TPPPO94811 219 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 OAS1P00973 400 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 FGFR2P21802 821 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 EEF1GP26641 437 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ADD2P35612 726 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 EIF4A3P38919 411 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ACADVLP49748 655 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 GRIN1Q05586 938 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 RPS6KA1Q15418 735 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 RILPL1Q5EBL4 403 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 COL23A1Q86Y22 540 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 FAM186BQ8IYM0 893 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 ZNF579Q8NAF0 562 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 FAM89AQ96GI7 184 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 PAGE5Q96GU1 130 aa7.32□□□□□ -1.24
SCN1A-213ENST00000636759 GPR101Q96P66 508 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 MAK16Q9BXY0 300 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 METTL14Q9HCE5 456 aaKnown RBP7.32□□□□□ -1.24
SCN1A-213ENST00000636759 DCTN3O75935 186 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 HSPA8P11142 646 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 VDRP11473 427 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PHBP35232 272 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ZAP70P43403 619 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 MTIF2P46199 727 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 SLCO1A2P46721 670 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ARFIP2P53365 341 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 DSG1Q02413 1049 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NSUN2Q08J23 767 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CNGA2Q16280 664 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KHDC1Q4VXA5 237 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PACS1Q6VY07 963 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CAPN12Q6ZSI9 719 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CROCCP3Q8IVE0 287 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 VPS52Q8N1B4 723 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 UHMK1Q8TAS1 419 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 APPBP2Q92624 585 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 STK33Q9BYT3 514 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ATAD3AQ9NVI7 634 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 HESX1Q9UBX0 185 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ZNF212Q9UDV6 495 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 GPC6Q9Y625 555 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 BTBD19C9JJ37 291 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PALMO75781 387 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KRT36O76013 467 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 HOXA10P31260 410 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 METAP2P50579 478 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 USP11P51784 963 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CTSWP56202 376 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 IFI35P80217 286 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PDE1CQ14123 709 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 C6orf163Q5TEZ5 329 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 C1orf228Q6PIY5 440 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 IZUMO2Q6UXV1 221 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 C14orf80Q86SX3 495 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NOSTRINQ8IVI9 506 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 SYNE4Q8N205 404 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 GDAP1Q8TB36 358 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 STAMQ92783 540 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 HSPBAP1Q96EW2 488 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 TGS1Q96RS0 853 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 MYLK2Q9H1R3 596 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 TRPC7Q9HCX4 862 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PIH1D3Q9NQM4 214 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 SCHIP1Q9P0W5 487 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 FBXO2Q9UK22 296 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 TMA7Q9Y2S6 64 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 TRIM17Q9Y577 477 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 RTL9Q8NET4 1388 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NPHP3-ACAD11A0A0J9YXS1 232 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ARHGAP10A1A4S6 786 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 SIGLEC16A6NMB1 481 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CCDC188H7C350 402 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KRIT1O00522 736 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NDC80O14777 642 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 RASGRF2O14827 1237 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 IFIT1P09914 478 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KCNA2P16389 499 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PPIDQ08752 370 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 SPIDRQ14159 915 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 ALX1Q15699 326 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KCTD21Q4G0X4 260 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CHADLQ6NUI6 762 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 KLHL35Q6PF15 583 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CENPOQ9BU64 300 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 PITPNM3Q9BZ71 974 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 DDX47Q9H0S4 455 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CSRNP2Q9H175 543 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NEUROG2Q9H2A3 272 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 NKIRAS1Q9NYS0 192 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 AIPL1Q9NZN9 384 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms