RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SP3Q02447 781 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 CETN1Q12798 172 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 GBP6Q6ZN66 633 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 TAS1R3Q7RTX0 852 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 VTI1AQ96AJ9 217 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 PRIMPOLQ96LW4 560 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 MAP7D2Q96T17 732 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 AP5M1Q9H0R1 490 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 UPF3AQ9H1J1 476 aaKnown RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 ZNHIT6Q9NWK9 470 aaKnown RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 FLRT1Q9NZU1 646 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 PLAGL2Q9UPG8 496 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 NRCAMQ92823 1304 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 K7ERI5 159 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 CLIC2O15247 247 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ADCY6O43306 1168 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ZSCAN12O43309 604 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ZNF286BP0CG31 522 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 INSRRP14616 1297 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 CYP2B6P20813 491 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ANXA13P27216 316 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 HOXD10P28358 340 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 PHKA2P46019 1235 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 CASP4P49662 377 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 PRMT2P55345 433 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 POU5F1Q01860 360 aaKnown RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 LAMTOR4Q0VGL1 99 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 PPFIA1Q13136 1202 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ARHGEF6Q15052 776 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 SNRNP35Q16560 246 aaKnown RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 MAPK6Q16659 721 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 FAM187BQ17R55 369 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 EXOC3L4Q17RC7 722 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 DCAF17Q5H9S7 520 aaPredicted RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 GJC2Q5T442 439 aaPredicted RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 ZNF410Q86VK4 478 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 GPD1LQ8N335 351 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 PRPF31Q8WWY3 499 aaKnown RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 BICD1Q96G01 975 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 ZNF830Q96NB3 372 aaPredicted RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 CBWD1Q9BRT8 395 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 KIFC3Q9BVG8 833 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 MRPL4Q9BYD3 311 aaKnown RBP11.53□□□□□ -0.56
CLN3-248ENST00000636355 USP20Q9Y2K6 914 aa11.53□□□□□ -0.56
CLN3-248ENST00000636355 MBLAC1A4D2B0 266 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 HAS3O00219 553 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 EXTL3O43909 919 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 TOM1L1O75674 476 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 ADSSP30520 456 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 HOXC8P31273 242 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 CYP2C19P33261 490 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 FMO5P49326 533 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 CTCFP49711 727 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 VAMP7P51809 220 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 ADKP55263 362 aaKnown RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 SOX10P56693 466 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 GJA9P57773 515 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 MYL7Q01449 175 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 GRM1Q13255 1194 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 NOLC1Q14978 699 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLN3-248ENST00000636355 GRIK4Q16099 956 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 CCL14Q16627 93 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 KYAT1Q16773 422 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 TCERG1LQ5VWI1 586 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 SLC39A4Q6P5W5 647 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 TRMT1LQ7Z2T5 733 aaKnown RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 CCDC170Q8IYT3 715 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 POMGNT1Q8WZA1 660 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 ABHD8Q96I13 439 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 PCMTD1Q96MG8 357 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 ZIC5Q96T25 663 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 RNPEPQ9H4A4 650 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 SPC25Q9HBM1 224 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 POLD4Q9HCU8 107 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 PRMT7Q9NVM4 692 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 GCNT4Q9P109 453 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 SUCLA2Q9P2R7 463 aaPredicted RBP11.52□□□□□ -0.57
CLN3-248ENST00000636355 ANK1P16157 1881 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 ATP8B3O60423 1300 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 CNTNAP2Q9UHC6 1331 aa11.52□□□□□ -0.57
CLN3-248ENST00000636355 A0A0B4J269 797 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 SEPT4O43236 478 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 ZEB2O60315 1214 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MSCO60682 206 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 HMGCRP04035 888 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 PRKCBP05771 671 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 CCDC175P0C221 793 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 GNAT1P11488 350 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 CST5P28325 142 aaPredicted RBP11.51□□□□□ -0.57
CLN3-248ENST00000636355 CTGFP29279 349 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 FLT3LGP49771 235 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MXI1P50539 228 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 PTENP60484 403 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 CLDN10P78369 228 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MKRN4PQ13434 485 aaPredicted RBP11.51□□□□□ -0.57
CLN3-248ENST00000636355 FSCN1Q16658 493 aaKnown RBP11.51□□□□□ -0.57
CLN3-248ENST00000636355 TMEM63BQ5T3F8 832 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 EFCAB12Q6NXP0 572 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms