RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 TMEM175Q9BSA9 504 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 ADAM7Q9H2U9 754 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 PCDHA12Q9UN75 941 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 MTCL1Q9Y4B5 1905 aaKnown RBP20.55■□□□□ 0.88
CLN3-241ENST00000635861 SRGAP2CP0DJJ0 459 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 FDPSP14324 419 aaKnown RBP20.54■□□□□ 0.88
CLN3-241ENST00000635861 MTHFRP42898 656 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 PTPN21Q16825 1174 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 IFNLR1Q8IU57 520 aaPredicted RBP20.54■□□□□ 0.88
CLN3-241ENST00000635861 ZNF579Q8NAF0 562 aaKnown RBP20.54■□□□□ 0.88
CLN3-241ENST00000635861 TMEM87AQ8NBN3 555 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 DYDC2Q96IM9 177 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 RSAD1Q9HA92 442 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 RGL1Q9NZL6 768 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 INPP5FQ9Y2H2 1132 aa20.54■□□□□ 0.88
CLN3-241ENST00000635861 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 ERLIN2O94905 339 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 SLITRK3O94933 977 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 NCLP19338 710 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 HOXA11P31270 313 aaPredicted RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 NCBP1Q09161 790 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 NR5A1Q13285 461 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 TFDP1Q14186 410 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 EARS2Q5JPH6 523 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 AGMOQ6ZNB7 445 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 RNF149Q8NC42 400 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 FBXL18Q96ME1 805 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 RIPOR3Q96MK2 946 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 MINDY3Q9H8M7 445 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 ANKEF1Q9NU02 776 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 C2orf16Q68DN1 1984 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 MEIS3P2A8K0S8 358 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 DGAT1O75907 488 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 CA8P35219 290 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 CYP4A11Q02928 519 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 TRIM29Q14134 588 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 CTTNQ14247 550 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 CALCRLQ16602 461 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 ME3Q16798 604 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 TMEM173Q86WV6 379 aaPredicted RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 TPH2Q8IWU9 490 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 SUGP1Q8IWZ8 645 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 PBXIP1Q96AQ6 731 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 FAM193BQ96PV7 902 aaPredicted RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 HSD17B14Q9BPX1 270 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 EIF2AK1Q9BQI3 630 aaKnown RBP20.53■□□□□ 0.88
CLN3-241ENST00000635861 NFKBIZQ9BYH8 718 aa20.53■□□□□ 0.88
CLN3-241ENST00000635861 INPPL1O15357 1258 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 ALDH2P05091 517 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 SLC11A1P49279 550 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 PTENP60484 403 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 NHLH1Q02575 133 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 UBXN11Q5T124 520 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 KIAA1841Q6NSI8 718 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 NOTUMQ6P988 496 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 NSUN7Q8NE18 718 aaKnown RBP20.52■□□□□ 0.87
CLN3-241ENST00000635861 DNAJB4Q9UDY4 337 aa20.52■□□□□ 0.87
CLN3-241ENST00000635861 NEMFO60524 1076 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 XRCC6P12956 609 aaKnown RBP eCLIP20.51■□□□□ 0.87
CLN3-241ENST00000635861 LONRF3Q496Y0 759 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 FBXL6Q8N531 539 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 EMILIN2Q9BXX0 1053 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 GBP3Q9H0R5 595 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 TTC12Q9H892 705 aaPredicted RBP20.51■□□□□ 0.87
CLN3-241ENST00000635861 XPNPEP1Q9NQW7 623 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 SSX2IPQ9Y2D8 614 aa20.51■□□□□ 0.87
CLN3-241ENST00000635861 ZMYM2Q9UBW7 1377 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 FAM205CA6NFA0 338 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 ITGA4P13612 1032 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 PTPN14Q15678 1187 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 ZNF280BQ86YH2 543 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 DIS3L2Q8IYB7 885 aaKnown RBP20.5■□□□□ 0.87
CLN3-241ENST00000635861 HACE1Q8IYU2 909 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 NECAB1Q8N987 351 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 SLC22A17Q8WUG5 538 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 BCL7CQ8WUZ0 217 aaPredicted RBP20.5■□□□□ 0.87
CLN3-241ENST00000635861 CCDC43Q96MW1 224 aaKnown RBP20.5■□□□□ 0.87
CLN3-241ENST00000635861 APOL5Q9BWW9 433 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 POMKQ9H5K3 350 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 USTQ9Y2C2 406 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 FAN1Q9Y2M0 1017 aa20.5■□□□□ 0.87
CLN3-241ENST00000635861 PLXNA3P51805 1871 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 TSPAN1O60635 241 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 DDHD2O94830 711 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 ATAT1Q5SQI0 421 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 UBALD2Q8IYN6 164 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 PLCD3Q8N3E9 789 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 ASIC4Q96FT7 647 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 MTMR9Q96QG7 549 aa20.49■□□□□ 0.87
CLN3-241ENST00000635861 BMP2KQ9NSY1 1161 aaPredicted RBP20.49■□□□□ 0.87
CLN3-241ENST00000635861 DAXXQ9UER7 740 aaPredicted RBP20.49■□□□□ 0.87
CLN3-241ENST00000635861 BTBD18B2RXH4 712 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 LARGE1O95461 756 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 ARL2P36404 184 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 RARRES1P49788 294 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 NEK4P51957 841 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 ORC2Q13416 577 aaPredicted RBP20.48■□□□□ 0.87
CLN3-241ENST00000635861 MTMR3Q13615 1198 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 ZBTB33Q86T24 672 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 ZDHHC14Q8IZN3 488 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms