RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 FOXRED1Q96CU9 486 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 COQ10AQ96MF6 247 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 CDC6Q99741 560 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 TRIM55Q9BYV6 548 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 TANGO6Q9C0B7 1094 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 SPON1Q9HCB6 807 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 ING3Q9NXR8 418 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 KCMF1Q9P0J7 381 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 RNF181Q9P0P0 153 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 MAP3K2Q9Y2U5 619 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 SALL3Q9BXA9 1300 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 TRBV23-1A0A0A0MS06 115 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 SLC12A8A0AV02 714 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 GAGE12BA1L429 117 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 PIPSLA2A3N6 862 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 GAGE12HA6NDE8 117 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 MGST3O14880 152 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 SPDEFO95238 335 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 ESRRBO95718 433 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 PRLP01236 227 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 SDHAP31040 664 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 RANGAP1P46060 587 aaPredicted RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 SUMO1P63165 101 aaKnown RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 IRF9Q00978 393 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 NHLH2Q02577 135 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 IQSEC1Q6DN90 963 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 ANKS3Q6ZW76 656 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 FAM83AQ86UY5 434 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 PLXDC1Q8IUK5 500 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 CKAP2LQ8IYA6 745 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 OR10H5Q8NGA6 315 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 OR5M3Q8NGP4 307 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 PMFBP1Q8TBY8 1022 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 DDB2Q92466 427 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 DLG3Q92796 817 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 IPO9Q96P70 1041 aaKnown RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 UIMC1Q96RL1 719 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 DCLRE1CQ96SD1 692 aaKnown RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 ADAM2Q99965 735 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 LSM14BQ9BX40 385 aaKnown RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 KRTAP2-2Q9BYT5 123 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 HAPLN2Q9GZV7 340 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 CHST2Q9Y4C5 530 aa1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 ZCCHC6Q5VYS8 1495 aaKnown RBP1.68□□□□□ -2.14
SMARCB1-209ENST00000635578 PBRM1Q86U86 1689 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 CNTNAP2Q9UHC6 1331 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 DCAF1Q9Y4B6 1507 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 COL11A2P13942 1736 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 UBA6A0AVT1 1052 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 PRR5-ARHGAP8B1AHC4 643 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 NRP1O14786 923 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 C1QL1O75973 258 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ALDH1A2O94788 518 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ZFPL1O95159 310 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 APOL3O95236 402 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 HLA-DOAP06340 250 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 C6orf222P0C671 652 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ZSCAN20P17040 1043 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 NAT1P18440 290 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 MPLP40238 635 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 SIM1P81133 766 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 RESTQ13127 1097 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 PDCD4Q53EL6 469 aaKnown RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 PIK3R6Q5UE93 754 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ABHD17BQ5VST6 288 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 FOXB2Q5VYV0 432 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 C1QL2Q7Z5L3 287 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 BMP8AQ7Z5Y6 402 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 MCF2L2Q86YR7 1114 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 SYT12Q8IV01 421 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 SH2D3CQ8N5H7 860 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 RNF169Q8NCN4 708 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 E2F7Q96AV8 911 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ZBTB9Q96C00 473 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 TUBGCP5Q96RT8 1024 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 TINF2Q9BSI4 451 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 SPATA9Q9BWV2 254 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 C1QTNF7Q9BXJ2 289 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 KLK15Q9H2R5 256 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ALG13Q9NP73 1137 aaKnown RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ACSS2Q9NR19 701 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 IL17RBQ9NRM6 502 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 INTS7Q9NVH2 962 aaKnown RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 ZNF70Q9UC06 446 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 NDOR1Q9UHB4 597 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 PFDN2Q9UHV9 154 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 SYNPO2Q9UMS6 1093 aa1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 TNPO3Q9Y5L0 923 aaKnown RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 BAZ1AQ9NRL2 1556 aaPredicted RBP1.67□□□□□ -2.14
SMARCB1-209ENST00000635578 WDR97A6NE52 1622 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 SMARCA4P51532 1647 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 CGB1A6NKQ9 187 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 B4E1Z4 1266 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 MTSS1O43312 755 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 ADCY3O60266 1144 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 EFCAB14O75071 495 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 APPP05067 770 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 HSP90B1P14625 803 aaKnown RBP1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 FDXRP22570 491 aa1.66□□□□□ -2.14
SMARCB1-209ENST00000635578 BMPR1AP36894 532 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms