RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 METTL24Q5JXM2 366 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 IQSEC1Q6DN90 963 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 ESRP1Q6NXG1 681 aaKnown RBP4.46□□□□□ -1.7
SCN1A-208ENST00000625916 UBE2R2Q712K3 238 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-208ENST00000625916 LCORLQ8N3X6 602 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 RTF1Q92541 710 aaKnown RBP4.46□□□□□ -1.7
SCN1A-208ENST00000625916 ARMC5Q96C12 935 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 MYEOVQ96EZ4 313 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 CLUHP3Q96NS8 147 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 PDCD2LQ9BRP1 358 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 SOX7Q9BT81 388 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 NDC1Q9BTX1 674 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 TRPM5Q9NZQ8 1165 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 ANKFY1Q9P2R3 1169 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 B4GALT6Q9UBX8 382 aa4.46□□□□□ -1.7
SCN1A-208ENST00000625916 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.46□□□□□ -1.7
SCN1A-208ENST00000625916 AHRRA9YTQ3 701 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 DNAJC8O75937 253 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-208ENST00000625916 PCDH8O95206 1070 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 CFBP00751 764 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 ZFP36P26651 326 aaKnown RBP4.45□□□□□ -1.7
SCN1A-208ENST00000625916 CD38P28907 300 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 PTTG1IPP53801 180 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 C21orf58P58505 322 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 RBL2Q08999 1139 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 ZKSCAN2Q63HK3 967 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 Q6YL49 198 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 ZZZ3Q8IYH5 903 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 UNC5BQ8IZJ1 945 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 PIK3C3Q8NEB9 887 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 OR52N2Q8NGI0 321 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 MKL1Q969V6 931 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 IL17RAQ96F46 866 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 BBC3Q96PG8 261 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-208ENST00000625916 CPEB1Q9BZB8 566 aaKnown RBP4.45□□□□□ -1.7
SCN1A-208ENST00000625916 ENKD1Q9H0I2 346 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 SERHL2Q9H4I8 314 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 WDR26Q9H7D7 661 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 SPO11Q9Y5K1 396 aa4.45□□□□□ -1.7
SCN1A-208ENST00000625916 E9PSI1 815 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 CBX4O00257 560 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 RNASET2O00584 256 aaKnown RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 ZEB1P37275 1124 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 AVPR1BP47901 424 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 ATXN1P54253 815 aaKnown RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 FAM189BP81408 668 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 FNDC3BQ53EP0 1204 aaKnown RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 GDF7Q7Z4P5 450 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 LILRB2Q8N423 598 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 PMFBP1Q8TBY8 1022 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 NTN5Q8WTR8 489 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 NAF1Q96HR8 494 aaKnown RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 DCLRE1CQ96SD1 692 aaKnown RBP4.44□□□□□ -1.7
SCN1A-208ENST00000625916 WDR11Q9BZH6 1224 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 SYNPO2LQ9H987 977 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 AKIP1Q9NQ31 210 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 OXSMQ9NWU1 459 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 PODXL2Q9NZ53 605 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 ZKSCAN5Q9Y2L8 839 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 MYPNQ86TC9 1320 aa4.44□□□□□ -1.7
SCN1A-208ENST00000625916 ST20-MTHFSA0A0A6YYL1 179 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 PRR5-ARHGAP8B1AHC4 643 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 NCR1O76036 304 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 NDUFA10O95299 355 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 JMJD7P0C870 316 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 HSP90B1P14625 803 aaKnown RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 GZMKP49863 264 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 WNT3AP56704 352 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 DUSP2Q05923 314 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CD69Q07108 199 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 MRPL49Q13405 166 aaKnown RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CFAP100Q494V2 611 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 SOGA3Q5TF21 947 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CDCA2Q69YH5 1023 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CMTR2Q8IYT2 770 aaKnown RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 LILRA3Q8N6C8 439 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CDYL2Q8N8U2 506 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 PPP1R14CQ8TAE6 165 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 CAVIN3Q969G5 261 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 FERMT2Q96AC1 680 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 LSM14BQ9BX40 385 aaKnown RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 INTS7Q9NVH2 962 aaKnown RBP4.43□□□□□ -1.7
SCN1A-208ENST00000625916 USP18Q9UMW8 372 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 PCDHB6Q9Y5E3 794 aa4.43□□□□□ -1.7
SCN1A-208ENST00000625916 TMEM200CA6NKL6 621 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 LY86O95711 162 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 ZNF37AP17032 561 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-208ENST00000625916 XPAP23025 273 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-208ENST00000625916 CD40P25942 277 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 DOK3Q7L591 496 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 RD3Q7Z3Z2 195 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 XYLT1Q86Y38 959 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 ARHGEF19Q8IW93 802 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 SPON1Q9HCB6 807 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 IFT57Q9NWB7 429 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 H2AFY2Q9P0M6 372 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-208ENST00000625916 CLCA2Q9UQC9 943 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 SPATA31A6Q5VVP1 1343 aa4.42□□□□□ -1.7
SCN1A-208ENST00000625916 GAGE12BA1L429 117 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 GAGE12HA6NDE8 117 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms